IGVFDS3201UTPN

released
1{
2    "@context": "/terms/",
3    "@id": "/curated-sets/IGVFDS3201UTPN/",
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6        "FileSet",
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8    ],
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10    "aliases": [
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12    ],
13    "assemblies": [
14        "GRCh38"
15    ],
16    "audit": {
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18            {
19                "category": "upload status not validated",
20                "detail": "Tabular file [IGVFFI6701SKKK](/tabular-files/IGVFFI6701SKKK/) has `upload_status` file not found. Files are expected to be validated or validation exempted.",
21                "level": 60,
22                "level_name": "ERROR",
23                "name": "audit_upload_status",
24                "path": "/tabular-files/IGVFFI6701SKKK/"
25            }
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27        "INTERNAL_ACTION": [
28            {
29                "category": "missing publication",
30                "detail": "Curated set [IGVFDS3201UTPN](/curated-sets/IGVFDS3201UTPN/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
31                "level": 30,
32                "level_name": "INTERNAL_ACTION",
33                "name": "audit_file_set_missing_publication",
34                "path": "/curated-sets/IGVFDS3201UTPN/"
35            }
36        ],
37        "NOT_COMPLIANT": [
38            {
39                "category": "missing file format specifications",
40                "detail": "Tabular file [IGVFFI9333CGMN](/tabular-files/IGVFFI9333CGMN/) has no `file_format_specifications`. Tabular files, with the exception of vcf files, are expected to link to a file format specifications document describing the headers of the file.",
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45            },
46            {
47                "category": "missing file format specifications",
48                "detail": "Tabular file [IGVFFI6701SKKK](/tabular-files/IGVFFI6701SKKK/) has no `file_format_specifications`. Tabular files, with the exception of vcf files, are expected to link to a file format specifications document describing the headers of the file.",
49                "level": 50,
50                "level_name": "NOT_COMPLIANT",
51                "name": "audit_file_no_file_format_specifications",
52                "path": "/tabular-files/IGVFFI6701SKKK/"
53            }
54        ]
55    },
56    "award": {
57        "@id": "/awards/HG011972/",
58        "component": "functional characterization",
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61            "title": "Jesse Engreitz"
62        },
63        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
64    },
65    "control_for": [],
66    "creation_timestamp": "2024-01-25T22:30:15.394463+00:00",
67    "description": "gRNAs were designed to target DNase peak in TeloHAEC in chr15:80,975,273-81,134,905 to determine regulatory elements of TLNRD1",
68    "file_set_type": "guide RNAs",
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76            "assembly": "GRCh38",
77            "content_type": "guide RNA sequences",
78            "controlled_access": false,
79            "creation_timestamp": "2024-01-25T23:04:04.183491+00:00",
80            "file_format": "bed",
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84            "status": "released",
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86            "upload_status": "validated"
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88        {
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90            "accession": "IGVFFI6701SKKK",
91            "aliases": [
92                "jesse-engreitz:tabular_file_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_gRNA_sequences_GRCh38_updated"
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94            "content_type": "guide RNA sequences",
95            "controlled_access": false,
96            "creation_timestamp": "2025-03-20T00:01:50.966744+00:00",
97            "file_format": "csv",
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100            "status": "in progress",
101            "submitted_file_name": "/Users/ronghao/Desktop/Research/data/eRZ10_FlowFISH/TLNRD1/design/20220126_TeloHAEC_CRISPRi_TLNRD1_IGVF_GRCh38.csv.gz",
102            "upload_status": "file not found"
103        }
104    ],
105    "input_for": [],
106    "lab": {
107        "@id": "/labs/jesse-engreitz/",
108        "title": "Jesse Engreitz, Stanford"
109    },
110    "release_timestamp": "2024-02-07T19:02:42.254830+00:00",
111    "schema_version": "8",
112    "status": "released",
113    "submitted_by": {
114        "@id": "/users/4b2083b4-24c1-41d8-9daa-e79299f00d6e/",
115        "title": "Ronghao Zhou"
116    },
117    "submitted_files_timestamp": "2023-12-05T01:12:59.697894+00:00",
118    "summary": "GRCh38 guide RNAs",
119    "uuid": "710c92a4-7dfd-458d-be82-3f14d645617b"
120}