IGVFDS0280IQAI

released
1{
2    "@context": "/terms/",
3    "@id": "/curated-sets/IGVFDS0280IQAI/",
4    "@type": [
5        "CuratedSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS0280IQAI",
10    "assemblies": [
11        "GRCh38"
12    ],
13    "audit": {
14        "INTERNAL_ACTION": [
15            {
16                "category": "mismatched status",
17                "detail": "Released reference file [IGVFFI9573KOZR](/reference-files/IGVFFI9573KOZR/) has in progress subobject document [ef8955ae-8297-49ca-a210-6d339e3deb0f](/documents/ef8955ae-8297-49ca-a210-6d339e3deb0f/).",
18                "level": 30,
19                "level_name": "INTERNAL_ACTION",
20                "name": "audit_item_status",
21                "path": "/reference-files/IGVFFI9573KOZR/"
22            },
23            {
24                "category": "missing publication",
25                "detail": "Curated set [IGVFDS0280IQAI](/curated-sets/IGVFDS0280IQAI/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_file_set_missing_publication",
29                "path": "/curated-sets/IGVFDS0280IQAI/"
30            }
31        ]
32    },
33    "award": {
34        "@id": "/awards/Community/",
35        "title": "Community"
36    },
37    "control_for": [],
38    "creation_timestamp": "2023-03-02T20:47:04.964847+00:00",
39    "description": "Gencode GRCh38 files",
40    "file_set_type": "genome",
41    "files": [
42        {
43            "@id": "/reference-files/IGVFFI7217ZMJZ/",
44            "accession": "IGVFFI7217ZMJZ",
45            "assembly": "GRCh38",
46            "content_type": "transcriptome reference",
47            "controlled_access": false,
48            "creation_timestamp": "2023-05-26T17:43:29.437707+00:00",
49            "file_format": "gtf",
50            "file_size": 53187124,
51            "href": "/reference-files/IGVFFI7217ZMJZ/@@download/IGVFFI7217ZMJZ.gtf.gz",
52            "s3_uri": "s3://igvf-files/2023/05/26/c0365077-01a2-4ad8-aff6-28dbd493470f/IGVFFI7217ZMJZ.gtf.gz",
53            "status": "archived",
54            "submitted_file_name": "gencode.v43.chr_patch_hapl_scaff.annotation.gtf.gz",
55            "transcriptome_annotation": "GENCODE 43",
56            "upload_status": "validated"
57        },
58        {
59            "@id": "/reference-files/IGVFFI0653VCGH/",
60            "accession": "IGVFFI0653VCGH",
61            "assembly": "GRCh38",
62            "content_type": "genome reference",
63            "controlled_access": false,
64            "creation_timestamp": "2023-05-26T17:44:39.853728+00:00",
65            "file_format": "fasta",
66            "file_size": 872949833,
67            "href": "/reference-files/IGVFFI0653VCGH/@@download/IGVFFI0653VCGH.fasta.gz",
68            "s3_uri": "s3://igvf-files/2023/05/26/dd49b369-b6be-4a4b-a3a5-84516a00f9b4/IGVFFI0653VCGH.fasta.gz",
69            "status": "released",
70            "upload_status": "validated"
71        },
72        {
73            "@id": "/reference-files/IGVFFI6815WBWB/",
74            "accession": "IGVFFI6815WBWB",
75            "assembly": "GRCh38",
76            "content_type": "genome reference",
77            "controlled_access": false,
78            "creation_timestamp": "2024-11-19T20:35:33.519986+00:00",
79            "file_format": "fasta",
80            "file_size": 983659424,
81            "href": "/reference-files/IGVFFI6815WBWB/@@download/IGVFFI6815WBWB.fasta.gz",
82            "s3_uri": "s3://igvf-files/2024/11/19/8ec0b051-a809-4585-acb5-e0837d89014d/IGVFFI6815WBWB.fasta.gz",
83            "status": "archived",
84            "submitted_file_name": "hg38.fa.gz",
85            "upload_status": "validated"
86        },
87        {
88            "@id": "/reference-files/IGVFFI9573KOZR/",
89            "accession": "IGVFFI9573KOZR",
90            "content_type": "transcriptome reference",
91            "controlled_access": false,
92            "creation_timestamp": "2025-03-17T23:05:45.530764+00:00",
93            "file_format": "gtf",
94            "file_size": 56391934,
95            "href": "/reference-files/IGVFFI9573KOZR/@@download/IGVFFI9573KOZR.gtf.gz",
96            "s3_uri": "s3://igvf-files/2025/03/17/3632d8a1-1c1c-40ce-afd2-b6dd340d8aac/IGVFFI9573KOZR.gtf.gz",
97            "status": "released",
98            "submitted_file_name": "IGVFFI7217ZMJZ_updated_chromosome_names.gtf.gz",
99            "transcriptome_annotation": "GENCODE 43",
100            "upload_status": "validated"
101        }
102    ],
103    "input_for": [],
104    "lab": {
105        "@id": "/labs/community/",
106        "title": "External Lab, Community"
107    },
108    "notes": "This file set was moved from the Cherry lab and award to a community lab and award.",
109    "release_timestamp": "2023-06-02T18:39:22.298671+00:00",
110    "schema_version": "8",
111    "status": "released",
112    "submitted_by": {
113        "@id": "/users/98fb23d3-0d79-4c3d-981d-01539e6589f1/",
114        "title": "Idan Gabdank"
115    },
116    "submitted_files_timestamp": "2023-05-26T17:43:29.437707+00:00",
117    "summary": "Homo sapiens GRCh38 GENCODE 43 genome",
118    "taxa": "Homo sapiens",
119    "transcriptome_annotations": [
120        "GENCODE 43"
121    ],
122    "uuid": "41cbaddb-73bc-4644-8a17-3b0c8040eb15"
123}