IGVFDS0000KTRT

released
1{
2    "@context": "/terms/",
3    "@id": "/curated-sets/IGVFDS0000KTRT/",
4    "@type": [
5        "CuratedSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS0000KTRT",
10    "aliases": [
11        "tim-reddy:starr-seq-variants-curated-set-P0011"
12    ],
13    "assemblies": [
14        "GRCh38"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing publication",
20                "detail": "Curated set [IGVFDS0000KTRT](/curated-sets/IGVFDS0000KTRT/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_file_set_missing_publication",
24                "path": "/curated-sets/IGVFDS0000KTRT/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012053/",
30        "component": "functional characterization",
31        "contact_pi": {
32            "@id": "/users/5d329c0e-3ea9-49bf-9bb9-844a53a882c0/",
33            "title": "Charles Gersbach"
34        },
35        "title": "High-Throughput Functional Annotation of Gene Regulatory Elements and Variants Critical to Complex Cellular Phenotypes"
36    },
37    "control_for": [],
38    "creation_timestamp": "2025-03-28T20:39:00.360268+00:00",
39    "donors": [
40        {
41            "@id": "/human-donors/IGVFDO6423GKXX/",
42            "accession": "IGVFDO6423GKXX",
43            "aliases": [
44                "tim-reddy:wg-starr-seq-superstarr-donor-NA19200"
45            ],
46            "sex": "male",
47            "status": "released",
48            "taxa": "Homo sapiens"
49        },
50        {
51            "@id": "/human-donors/IGVFDO8168VHEY/",
52            "accession": "IGVFDO8168VHEY",
53            "aliases": [
54                "tim-reddy:wg-starr-seq-superstarr-donor-NA19248"
55            ],
56            "sex": "male",
57            "status": "released",
58            "taxa": "Homo sapiens"
59        },
60        {
61            "@id": "/human-donors/IGVFDO3212XAPT/",
62            "accession": "IGVFDO3212XAPT",
63            "aliases": [
64                "tim-reddy:wg-starr-seq-superstarr-donor-NA19147"
65            ],
66            "sex": "female",
67            "status": "released",
68            "taxa": "Homo sapiens"
69        },
70        {
71            "@id": "/human-donors/IGVFDO7366CGJS/",
72            "accession": "IGVFDO7366CGJS",
73            "aliases": [
74                "tim-reddy:wg-starr-seq-superstarr-donor-NA19185"
75            ],
76            "sex": "female",
77            "status": "released",
78            "taxa": "Homo sapiens"
79        },
80        {
81            "@id": "/human-donors/IGVFDO4913VRQG/",
82            "accession": "IGVFDO4913VRQG",
83            "aliases": [
84                "tim-reddy:wg-starr-seq-superstarr-donor-NA18511"
85            ],
86            "sex": "female",
87            "status": "released",
88            "taxa": "Homo sapiens"
89        }
90    ],
91    "file_set_type": "variants",
92    "files": [
93        {
94            "@id": "/tabular-files/IGVFFI5641GRHL/",
95            "accession": "IGVFFI5641GRHL",
96            "aliases": [
97                "tim-reddy:starr-seq-variants-vcf-P011"
98            ],
99            "assembly": "GRCh38",
100            "content_type": "variants",
101            "controlled_access": false,
102            "creation_timestamp": "2025-02-24T17:22:15.603983+00:00",
103            "file_format": "vcf",
104            "file_size": 2458714877,
105            "href": "/tabular-files/IGVFFI5641GRHL/@@download/IGVFFI5641GRHL.vcf.gz",
106            "s3_uri": "s3://igvf-files/2025/02/24/3a4ab521-cd12-4cd9-845f-aa14ea425b12/IGVFFI5641GRHL.vcf.gz",
107            "status": "released",
108            "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/reference_data/AIM_1_STARR_seq/variants.1000G.pool11.fixed.vcf.gz",
109            "upload_status": "validated"
110        }
111    ],
112    "input_for": [],
113    "lab": {
114        "@id": "/labs/tim-reddy/",
115        "title": "Tim Reddy, Duke"
116    },
117    "release_timestamp": "2025-04-09T16:42:54.802688+00:00",
118    "schema_version": "8",
119    "status": "released",
120    "submitted_by": {
121        "@id": "/users/1e75d989-a438-4d77-a451-8a297fd3636e/",
122        "title": "Ian Whaling"
123    },
124    "submitted_files_timestamp": "2025-02-24T17:22:15.603983+00:00",
125    "summary": "Homo sapiens GRCh38 variants",
126    "taxa": "Homo sapiens",
127    "uuid": "7f021741-6165-48af-b6f1-23958220eb47"
128}