{
"@context": "/terms/",
"@id": "/construct-library-sets/IGVFDS9668QVZD/",
"@type": [
"ConstructLibrarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS9668QVZD",
"applied_to_samples": [
{
"@id": "/in-vitro-systems/IGVFSM0720XHJA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0720XHJA",
"classifications": [
"differentiated cell specimen",
"pooled cell specimen"
],
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"status": "released",
"taxa": "Homo sapiens"
}
],
"nucleic_acid_delivery": "lentiviral transduction",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000679/",
"status": "released",
"term_name": "glutamatergic neuron"
}
}
],
"associated_phenotypes": [
{
"@id": "/phenotype-terms/MONDO_0005258/",
"status": "released",
"term_id": "MONDO:0005258",
"term_name": "autism spectrum disorder"
}
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released construct library set [IGVFDS9668QVZD](/construct-library-sets/IGVFDS9668QVZD/) has in progress subobject tabular file [IGVFFI4914OUJH](/tabular-files/IGVFFI4914OUJH/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/construct-library-sets/IGVFDS9668QVZD/"
}
]
},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"control_for": [],
"creation_timestamp": "2024-03-19T14:05:03.568731+00:00",
"documents": [
"/documents/c8235b91-3cd3-4ade-9185-ce2e9a64ae64/",
"/documents/689da8fd-6da3-4a03-80d1-a86917f7d2ce/"
],
"file_set_type": "reporter library",
"files": [
{
"@id": "/sequence-files/IGVFFI7550XNYO/",
"accession": "IGVFFI7550XNYO",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI7550XNYO/@@download/IGVFFI7550XNYO.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3111OZMK/",
"accession": "IGVFFI3111OZMK",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI3111OZMK/@@download/IGVFFI3111OZMK.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4516TPML/",
"accession": "IGVFFI4516TPML",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI4516TPML/@@download/IGVFFI4516TPML.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3317RVVD/",
"accession": "IGVFFI3317RVVD",
"content_type": "seqspec",
"file_format": "yaml",
"href": "/configuration-files/IGVFFI3317RVVD/@@download/IGVFFI3317RVVD.yaml.gz",
"status": "released",
"upload_status": "validation exempted"
}
],
"input_for": [
"/analysis-sets/IGVFDS0864KDKH/",
"/analysis-sets/IGVFDS0965BMDY/"
],
"integrated_content_files": [
{
"@id": "/tabular-files/IGVFFI3512DUKP/",
"accession": "IGVFFI3512DUKP",
"content_type": "MPRA sequence designs",
"file_format": "tsv",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/tabular-files/IGVFFI4914OUJH/",
"accession": "IGVFFI4914OUJH",
"content_type": "MPRA sequence designs",
"file_format": "tsv",
"status": "in progress",
"upload_status": "validated"
}
],
"lab": {
"@id": "/labs/nadav-ahituv/",
"title": "Nadav Ahituv, UCSF"
},
"publications": [
{
"@id": "/publications/a9a39fe1-5a47-429f-86d6-a4013dbeba2d/",
"publication_identifiers": [
"PMID:36834916"
],
"status": "released"
}
],
"release_timestamp": "2025-01-09T20:34:27.320109+00:00",
"schema_version": "10",
"scope": "genome-wide",
"selection_criteria": [
"histone modifications",
"transcription start sites"
],
"status": "released",
"submitted_by": {
"@id": "/users/696ac72c-9846-469d-8bf1-8bd01856d4ba/",
"title": "Thorben Maass"
},
"submitted_files_timestamp": "2024-04-02T10:16:57.149643+00:00",
"summary": "reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder",
"uuid": "1067a499-aa47-4d3f-bc14-6353f4458075"
}