{
"@context": "/terms/",
"@id": "/construct-library-sets/IGVFDS7655GRFI/",
"@type": [
"ConstructLibrarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS7655GRFI",
"aliases": [
"jay-shendure:construct_library_scQers_LaLanne"
],
"applied_to_samples": [
{
"@id": "/in-vitro-systems/IGVFSM6984COJC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6984COJC",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_10Xlane2"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM1855DKEJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1855DKEJ",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_10Xlane2"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM5738IXAN/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5738IXAN",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day2"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 2 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM8160AXXB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8160AXXB",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day6"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 6 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM5739JCXR/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5739JCXR",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day14"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM0374VHIT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0374VHIT",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day6"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 6 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM1576AJXB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1576AJXB",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day12"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM2212NOOQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2212NOOQ",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day18"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM5495EAGK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5495EAGK",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day0"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM5929KNAA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5929KNAA",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day6"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM1838HBLK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1838HBLK",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day10"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 10 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM8486OPKV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8486OPKV",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day2"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 2 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM7280CZVB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7280CZVB",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day21"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM9047XSAG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9047XSAG",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day16"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM0317RLIP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0317RLIP",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_10Xlane1"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM6856KISH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6856KISH",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day12"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM4494VUEQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4494VUEQ",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_10Xlane1"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM8913GAXO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8913GAXO",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_10Xlane1"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM7613TOIM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7613TOIM",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day4"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM1019NMFD/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1019NMFD",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day18"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM3027MUYF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3027MUYF",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day21"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM5978TPKG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5978TPKG",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day4"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM3546ITTD/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3546ITTD",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day14"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM8780MGRB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8780MGRB",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day16"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM8231RSVA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8231RSVA",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day16"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM7672WVIM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7672WVIM",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day8"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM4704LAYE/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4704LAYE",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_10Xlane2"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM0716YPPC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0716YPPC",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day0"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM5894TCUC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5894TCUC",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day8"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM1756IJDM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1756IJDM",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day12"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM7918INCH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7918INCH",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day20"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM5166XVRM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5166XVRM",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day8"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM3228TEOC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3228TEOC",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day0"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM0731AZZQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0731AZZQ",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day20"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM3811HZXX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3811HZXX",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day4"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM6391CMQH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6391CMQH",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repB_bulk_day10"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 10 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM1671CSBE/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1671CSBE",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day0"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM0091UGGN/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0091UGGN",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day8"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM1212IBIX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1212IBIX",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day20"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM0608PJZS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0608PJZS",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day12"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM9302LKGG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9302LKGG",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day18"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM3017QZLW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3017QZLW",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day20"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM4092RUKD/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4092RUKD",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day16"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
},
{
"@id": "/in-vitro-systems/IGVFSM3379XAQN/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3379XAQN",
"aliases": [
"jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day18"
],
"classifications": [
"differentiated cell specimen"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO3898MNLZ/",
"taxa": "Mus musculus"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"term_name": "mouse embryonic stem cell"
}
],
"status": "released",
"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0014374/",
"term_name": "embryoid body"
}
}
],
"audit": {
"WARNING": [
{
"category": "missing files",
"detail": "Construct library set [IGVFDS7655GRFI](/construct-library-sets/IGVFDS7655GRFI/) has no `files`. File sets are expected to have files.",
"level": 40,
"level_name": "WARNING",
"name": "audit_no_files",
"path": "/construct-library-sets/IGVFDS7655GRFI/"
}
]
},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"control_for": [],
"creation_timestamp": "2024-08-01T21:58:14.671078+00:00",
"documents": [
"/documents/1129eed4-59d7-4d61-84a1-9480b0368b72/",
"/documents/e90669ea-1311-43b1-952b-fc863c7898a5/"
],
"file_set_type": "reporter library",
"files": [],
"input_for": [],
"integrated_content_files": [
{
"@id": "/tabular-files/IGVFFI8904VCYX/",
"accession": "IGVFFI8904VCYX",
"aliases": [
"jay-shendure:tabularfile_CREs_LaLanne"
],
"content_type": "MPRA sequence designs",
"file_format": "tsv",
"upload_status": "validated"
}
],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"large_scale_loci_list": {
"@id": "/tabular-files/IGVFFI8904VCYX/",
"accession": "IGVFFI8904VCYX",
"aliases": [
"jay-shendure:tabularfile_CREs_LaLanne"
]
},
"publications": [
{
"@id": "/publications/c50e0845-6b55-4d8b-8833-143babd69364/",
"publication_identifiers": [
"doi:10.1101/2022.12.10.519236"
]
},
{
"@id": "/publications/398edd7f-1ebb-40a0-a04b-450a2565667c/",
"publication_identifiers": [
"doi:10.1038/s41592-024-02260-3",
"PMID:38724692"
]
}
],
"release_timestamp": "2024-10-16T23:16:34.722521+00:00",
"schema_version": "10",
"scope": "loci",
"selection_criteria": [
"accessible genome regions"
],
"status": "released",
"submitted_by": {
"@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
"title": "Beth Martin"
},
"summary": "Reporter library targeting accessible genome regions in many genomic loci",
"uuid": "e07e0491-b800-44d8-a707-19105efa09cd"
}