{
"@context": "/terms/",
"@id": "/construct-library-sets/IGVFDS5042GGCM/",
"@type": [
"ConstructLibrarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS5042GGCM",
"aliases": [
"tim-reddy:starr-seq-construct-lib-P015"
],
"applied_to_samples": [
{
"@id": "/in-vitro-systems/IGVFSM4814FXFA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4814FXFA",
"aliases": [
"tim-reddy:starr-seq-k562-P015"
],
"classifications": [
"cell line"
],
"donors": [
{
"@id": "/human-donors/IGVFDO9208RPQQ/",
"status": "released",
"taxa": "Homo sapiens"
}
],
"nucleic_acid_delivery": "nucleofection",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
}
],
"status": "released",
"summary": "Homo sapiens (female) K562 cell line transfected with a reporter library"
}
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Construct library set [IGVFDS5042GGCM](/construct-library-sets/IGVFDS5042GGCM/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/construct-library-sets/IGVFDS5042GGCM/"
},
{
"category": "missing sequence specification",
"detail": "Construct library set [IGVFDS5042GGCM](/construct-library-sets/IGVFDS5042GGCM/) has sequence file(s): [IGVFFI0676JCYR](/sequence-files/IGVFFI0676JCYR/), [IGVFFI3994KWTJ](/sequence-files/IGVFFI3994KWTJ/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/construct-library-sets/IGVFDS5042GGCM/"
}
]
},
"award": {
"@id": "/awards/HG012053/",
"component": "functional characterization"
},
"control_for": [],
"creation_timestamp": "2025-02-06T03:50:51.791066+00:00",
"documents": [
"/documents/54c9a9b9-8dc8-42b5-9784-37e574c1ef5b/"
],
"file_set_type": "reporter library",
"files": [
{
"@id": "/sequence-files/IGVFFI0676JCYR/",
"accession": "IGVFFI0676JCYR",
"aliases": [
"tim-reddy:starr-seq-dna-fastq-k562-P015-R1"
],
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI0676JCYR/@@download/IGVFFI0676JCYR.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3994KWTJ/",
"accession": "IGVFFI3994KWTJ",
"aliases": [
"tim-reddy:starr-seq-dna-fastq-k562-P015-R2"
],
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI3994KWTJ/@@download/IGVFFI3994KWTJ.fastq.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS1147GIJW/"
],
"integrated_content_files": [
{
"@id": "/tabular-files/IGVFFI5520HIUN/",
"accession": "IGVFFI5520HIUN",
"aliases": [
"tim-reddy:starr-seq-variants-vcf-P015"
],
"content_type": "variants",
"file_format": "vcf",
"status": "released",
"upload_status": "validated"
}
],
"lab": {
"@id": "/labs/tim-reddy/",
"title": "Tim Reddy, Duke"
},
"release_timestamp": "2025-04-09T16:40:12.107959+00:00",
"schema_version": "10",
"scope": "genome-wide",
"selection_criteria": [
"random selections"
],
"status": "released",
"submitted_by": {
"@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
"title": "Alejandro Barrera"
},
"submitted_files_timestamp": "2025-02-06T04:03:57.239726+00:00",
"summary": "reporter library targeting random selections genome-wide",
"uuid": "1e63ca92-1235-4dae-9317-9d3150d8298d"
}