{
"@context": "/terms/",
"@id": "/construct-library-sets/IGVFDS3661QZGP/",
"@type": [
"ConstructLibrarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS3661QZGP",
"aliases": [
"tim-reddy:starr-seq-construct-lib-P014"
],
"applied_to_samples": [
{
"@id": "/in-vitro-systems/IGVFSM3422QUYJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3422QUYJ",
"aliases": [
"tim-reddy:starr-seq-k562-P014"
],
"classifications": [
"cell line"
],
"donors": [
{
"@id": "/human-donors/IGVFDO9208RPQQ/",
"status": "released",
"taxa": "Homo sapiens"
}
],
"nucleic_acid_delivery": "nucleofection",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
}
],
"status": "released",
"summary": "Homo sapiens (female) K562 cell line transfected with a reporter library"
}
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Construct library set [IGVFDS3661QZGP](/construct-library-sets/IGVFDS3661QZGP/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/construct-library-sets/IGVFDS3661QZGP/"
},
{
"category": "missing sequence specification",
"detail": "Construct library set [IGVFDS3661QZGP](/construct-library-sets/IGVFDS3661QZGP/) has sequence file(s): [IGVFFI3287XCGP](/sequence-files/IGVFFI3287XCGP/), [IGVFFI1304YZRD](/sequence-files/IGVFFI1304YZRD/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/construct-library-sets/IGVFDS3661QZGP/"
}
]
},
"award": {
"@id": "/awards/HG012053/",
"component": "functional characterization"
},
"control_for": [],
"creation_timestamp": "2025-02-06T03:50:50.610514+00:00",
"documents": [
"/documents/54c9a9b9-8dc8-42b5-9784-37e574c1ef5b/"
],
"file_set_type": "reporter library",
"files": [
{
"@id": "/sequence-files/IGVFFI3287XCGP/",
"accession": "IGVFFI3287XCGP",
"aliases": [
"tim-reddy:starr-seq-dna-fastq-k562-P014-R1"
],
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI3287XCGP/@@download/IGVFFI3287XCGP.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1304YZRD/",
"accession": "IGVFFI1304YZRD",
"aliases": [
"tim-reddy:starr-seq-dna-fastq-k562-P014-R2"
],
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI1304YZRD/@@download/IGVFFI1304YZRD.fastq.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS2175LLDQ/"
],
"integrated_content_files": [
{
"@id": "/tabular-files/IGVFFI2735XXYR/",
"accession": "IGVFFI2735XXYR",
"aliases": [
"tim-reddy:starr-seq-variants-vcf-P014"
],
"content_type": "variants",
"file_format": "vcf",
"status": "released",
"upload_status": "validated"
}
],
"lab": {
"@id": "/labs/tim-reddy/",
"title": "Tim Reddy, Duke"
},
"release_timestamp": "2025-04-09T16:40:06.175413+00:00",
"schema_version": "10",
"scope": "genome-wide",
"selection_criteria": [
"random selections"
],
"status": "released",
"submitted_by": {
"@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
"title": "Alejandro Barrera"
},
"submitted_files_timestamp": "2025-02-06T04:03:56.006170+00:00",
"summary": "reporter library targeting random selections genome-wide",
"uuid": "7883a84c-6423-4669-bf86-34a34746f2b0"
}