{
"@context": "/terms/",
"@id": "/construct-library-sets/IGVFDS1589ODOW/",
"@type": [
"ConstructLibrarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS1589ODOW",
"applied_to_samples": [
{
"@id": "/in-vitro-systems/IGVFSM9009DVDG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9009DVDG",
"classifications": [
"cell line",
"pooled cell specimen"
],
"donors": [
{
"@id": "/human-donors/IGVFDO2837BRET/",
"status": "released",
"taxa": "Homo sapiens"
}
],
"nucleic_acid_delivery": "lentiviral transduction",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library"
},
{
"@id": "/in-vitro-systems/IGVFSM8026MGEJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8026MGEJ",
"classifications": [
"cell line",
"pooled cell specimen"
],
"donors": [
{
"@id": "/human-donors/IGVFDO1183RRBM/",
"status": "released",
"taxa": "Homo sapiens"
}
],
"nucleic_acid_delivery": "lentiviral transduction",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001184/",
"status": "released",
"term_name": "HEK293T"
}
],
"status": "released",
"summary": "Homo sapiens (female) HEK293T pooled cell specimen transduced (lentivirus) with a reporter library"
}
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Construct library set [IGVFDS1589ODOW](/construct-library-sets/IGVFDS1589ODOW/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/construct-library-sets/IGVFDS1589ODOW/"
},
{
"category": "mismatched status",
"detail": "Released construct library set [IGVFDS1589ODOW](/construct-library-sets/IGVFDS1589ODOW/) has in progress subobject tabular file [IGVFFI7321WGMD](/tabular-files/IGVFFI7321WGMD/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/construct-library-sets/IGVFDS1589ODOW/"
}
]
},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"control_for": [],
"creation_timestamp": "2024-03-21T11:14:41.633125+00:00",
"documents": [
"/documents/c8235b91-3cd3-4ade-9185-ce2e9a64ae64/",
"/documents/689da8fd-6da3-4a03-80d1-a86917f7d2ce/"
],
"file_set_type": "reporter library",
"files": [
{
"@id": "/sequence-files/IGVFFI7003XVUG/",
"accession": "IGVFFI7003XVUG",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI7003XVUG/@@download/IGVFFI7003XVUG.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8640LLIG/",
"accession": "IGVFFI8640LLIG",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI8640LLIG/@@download/IGVFFI8640LLIG.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4403ENTR/",
"accession": "IGVFFI4403ENTR",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI4403ENTR/@@download/IGVFFI4403ENTR.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5231ATBS/",
"accession": "IGVFFI5231ATBS",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI5231ATBS/@@download/IGVFFI5231ATBS.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0576IRDC/",
"accession": "IGVFFI0576IRDC",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI0576IRDC/@@download/IGVFFI0576IRDC.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2142OYFW/",
"accession": "IGVFFI2142OYFW",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI2142OYFW/@@download/IGVFFI2142OYFW.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0921LXBF/",
"accession": "IGVFFI0921LXBF",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI0921LXBF/@@download/IGVFFI0921LXBF.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6354NJGB/",
"accession": "IGVFFI6354NJGB",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI6354NJGB/@@download/IGVFFI6354NJGB.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6807PKQA/",
"accession": "IGVFFI6807PKQA",
"content_type": "reads",
"file_format": "fastq",
"href": "/sequence-files/IGVFFI6807PKQA/@@download/IGVFFI6807PKQA.fastq.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7954ERXG/",
"accession": "IGVFFI7954ERXG",
"content_type": "seqspec",
"file_format": "yaml",
"href": "/configuration-files/IGVFFI7954ERXG/@@download/IGVFFI7954ERXG.yaml.gz",
"status": "released",
"upload_status": "validation exempted"
}
],
"input_for": [
"/analysis-sets/IGVFDS0514BHNX/",
"/analysis-sets/IGVFDS3537ZJAF/"
],
"integrated_content_files": [
{
"@id": "/tabular-files/IGVFFI2041KXFD/",
"accession": "IGVFFI2041KXFD",
"content_type": "MPRA sequence designs",
"file_format": "tsv",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/tabular-files/IGVFFI7321WGMD/",
"accession": "IGVFFI7321WGMD",
"content_type": "MPRA sequence designs",
"file_format": "tsv",
"status": "in progress",
"upload_status": "validated"
}
],
"lab": {
"@id": "/labs/nadav-ahituv/",
"title": "Nadav Ahituv, UCSF"
},
"release_timestamp": "2025-01-30T17:46:54.822580+00:00",
"schema_version": "10",
"scope": "genome-wide",
"selection_criteria": [
"candidate cis-regulatory elements"
],
"status": "released",
"submitted_by": {
"@id": "/users/696ac72c-9846-469d-8bf1-8bd01856d4ba/",
"title": "Thorben Maass"
},
"submitted_files_timestamp": "2024-10-14T14:08:46.539314+00:00",
"summary": "reporter library targeting candidate cis-regulatory elements genome-wide",
"uuid": "c71f909b-d07b-4a9b-bf8d-2cac9b7fe3c9"
}