{
"@context": "/terms/",
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],
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],
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{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS9976WMCI](/auxiliary-sets/IGVFDS9976WMCI/) has sequence file(s): [IGVFFI3939YRKP](/sequence-files/IGVFFI3939YRKP/), [IGVFFI8413FBXY](/sequence-files/IGVFFI8413FBXY/), [IGVFFI7863LXLL](/sequence-files/IGVFFI7863LXLL/), [IGVFFI1976BTXC](/sequence-files/IGVFFI1976BTXC/), [IGVFFI8279OHEK](/sequence-files/IGVFFI8279OHEK/), [IGVFFI1480DNXC](/sequence-files/IGVFFI1480DNXC/), [IGVFFI8928YFKN](/sequence-files/IGVFFI8928YFKN/), [IGVFFI8077IAPC](/sequence-files/IGVFFI8077IAPC/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
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"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS9976WMCI/"
}
]
},
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"title": "Gary Hon"
},
"title": "Multiscale functional characterization of genomic variation in human developmental disorders"
},
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"summary": "guide RNA sequences"
}
],
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}
],
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"creation_timestamp": "2024-02-15T23:35:43.830643+00:00",
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}
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{
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{
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"creation_timestamp": "2024-02-21T18:29:40.059720+00:00",
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},
{
"@id": "/sequence-files/IGVFFI1480DNXC/",
"accession": "IGVFFI1480DNXC",
"aliases": [
"gary-hon:LW236B-2_1_R1"
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"creation_timestamp": "2024-02-21T18:29:45.309061+00:00",
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{
"@id": "/sequence-files/IGVFFI8928YFKN/",
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},
{
"@id": "/sequence-files/IGVFFI8077IAPC/",
"accession": "IGVFFI8077IAPC",
"aliases": [
"gary-hon:LW236B-2_2_R2"
],
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"controlled_access": false,
"creation_timestamp": "2024-02-21T18:30:22.131378+00:00",
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}
],
"input_for": [
"/analysis-sets/IGVFDS9192YMGI/"
],
"lab": {
"@id": "/labs/gary-hon/",
"title": "Gary Hon, UT"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS0890CUXC/",
"accession": "IGVFDS0890CUXC",
"aliases": [
"gary-hon:CM_Pilot_2_PB_RNA_LW236"
],
"preferred_assay_title": "Perturb-seq",
"status": "preview"
}
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM5652SBGF/",
"@type": [
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"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5652SBGF",
"aliases": [
"nikhil-munshi:differentited_WTC11_CM_Pilot1_PB_LW236"
],
"cellular_sub_pool": "subpool_LW266",
"classifications": [
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],
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"modifications": [
{
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"modality": "interference",
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}
],
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{
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"@type": [
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"OntologyTerm",
"Item"
],
"aliases": [
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],
"status": "released",
"summary": "GM25256 (WTC-11)",
"term_name": "GM25256 (WTC-11)"
}
],
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"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW266) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library",
"targeted_sample_term": {
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"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens"
}
],
"schema_version": "12",
"status": "preview",
"submitted_by": {
"@id": "/users/b05645f1-2d56-4a5e-b272-4601e555a3fa/",
"title": "Mpathi Nzima"
},
"submitted_files_timestamp": "2024-02-21T18:29:34.337512+00:00",
"summary": "gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci",
"uuid": "8d690f7d-8b80-4e06-a069-c9f5d4debfd6"
}