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IGVFDS9737EJUL

released
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf13_10x3

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
I1
1
22HHHWLT3
1
61 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
22HHHWLT3
1
155 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
22HHHWLT3
2
65 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22HHHWLT3
3
63 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22HHHWLT3
2
67 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
22HHHWLT3
2
171 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
22HHHWLT3
2
385 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
22HHHWLT3
3
61 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
22HHHWLT3
3
160 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
22HHHWLT3
1
60 MB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples

Donors

4 items
Aliases
  • thomas-quertermous:LAD_multiome_donor2
female
Homo sapiens
  • thomas-quertermous:LAD_multiome_donor1
male
Homo sapiens
  • thomas-quertermous:LAD_multiome_donor3
female
Homo sapiens
  • thomas-quertermous:LAD_multiome_donor4
male
Homo sapiens

Related Measurement Sets

2 items
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf13_10x3
Ansuman Satpathy, Stanford
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf13_10x3
Ansuman Satpathy, Stanford

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf13_analysis_set_10x3
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford