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INDEXED
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AuxiliarySet
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IGVFDS9737EJUL
IGVFDS9737EJUL
released
GRU
PUB
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File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf13_10x3
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0657CEVJ
fastq
reads
I1
1
IGVFFI8016GIWG
Illumina NovaSeq X
22HHHWLT3
1
61 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2749SPVL
fastq
reads
R1
1
IGVFFI8016GIWG
Illumina NovaSeq X
22HHHWLT3
1
155 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2897XPZP
fastq
reads
I2
1
IGVFFI2046TYZY
Illumina NovaSeq X
22HHHWLT3
2
65 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3857HTOQ
fastq
reads
I1
1
IGVFFI3113PSDE
Illumina NovaSeq X
22HHHWLT3
3
63 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4853HNMJ
fastq
reads
I1
1
IGVFFI2046TYZY
Illumina NovaSeq X
22HHHWLT3
2
67 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6506ADJK
fastq
reads
R1
1
IGVFFI2046TYZY
Illumina NovaSeq X
22HHHWLT3
2
171 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6625CGTH
fastq
reads
R2
1
IGVFFI2046TYZY
Illumina NovaSeq X
22HHHWLT3
2
385 MB
Ansuman Satpathy, Stanford
validated
IGVFFI7032ZMJP
fastq
reads
I2
1
IGVFFI3113PSDE
Illumina NovaSeq X
22HHHWLT3
3
61 MB
Ansuman Satpathy, Stanford
validated
IGVFFI7965EEKP
fastq
reads
R1
1
IGVFFI3113PSDE
Illumina NovaSeq X
22HHHWLT3
3
160 MB
Ansuman Satpathy, Stanford
validated
IGVFFI9532OJKM
fastq
reads
I2
1
IGVFFI8016GIWG
Illumina NovaSeq X
22HHHWLT3
1
60 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM1606SNOP
MultiplexedSample
left coronary artery
coronary artery disorder
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples
Donors
4 items
Accession
Aliases
Sex
Taxa
IGVFDO1255NCVH
thomas-quertermous:LAD_multiome_donor2
female
Homo sapiens
IGVFDO2120EMSK
thomas-quertermous:LAD_multiome_donor1
male
Homo sapiens
IGVFDO4204VAPA
thomas-quertermous:LAD_multiome_donor3
female
Homo sapiens
IGVFDO4556QZMA
thomas-quertermous:LAD_multiome_donor4
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS0681XTSI
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf13_10x3
Ansuman Satpathy, Stanford
IGVFDS8107GLLI
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf13_10x3
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5970TALX
AnalysisSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:igvf13_analysis_set_10x3
Ansuman Satpathy, Stanford