{
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{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI8500GKDJ](/tabular-files/IGVFFI8500GKDJ/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
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}
]
},
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"file_size": 469,
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},
{
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{
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},
{
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],
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"status": "released"
},
{
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"jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR3_S97",
"jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR4_S103"
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"status": "released"
}
],
"release_timestamp": "2024-07-10T20:28:02.761788+00:00",
"samples": [
{
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],
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"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR2_S7",
"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinA-PCR3_S97",
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{
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},
{
"@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
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}
],
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{
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"SampleTerm",
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"Item"
],
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"igvf:HCT116"
],
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"term_name": "HCT116"
}
],
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"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4469TBGW/",
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"Biosample",
"Sample",
"Item"
],
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"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinB-PCR3_S98",
"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinB-PCR4_S104"
],
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],
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{
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},
{
"@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
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}
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],
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],
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}
],
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"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2684MUBP/",
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"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
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"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinC-PCR2_S9",
"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinC-PCR3_S99",
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],
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],
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],
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{
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},
{
"@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
"modality": "degradation",
"status": "released"
}
],
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{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
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"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1425VIPO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
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"aliases": [
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"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR2_S10",
"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR3_S100",
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],
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],
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],
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{
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"modality": "interference",
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},
{
"@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
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"status": "released"
}
],
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{
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"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
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"igvf:HCT116"
],
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"summary": "HCT116",
"term_name": "HCT116"
}
],
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"taxa": "Homo sapiens"
},
{
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"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
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"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinE-PCR2_S11",
"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinE-PCR3_S101"
],
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],
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],
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{
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"modality": "interference",
"status": "released"
},
{
"@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
"modality": "degradation",
"status": "released"
}
],
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{
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"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
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"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9117BTSA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
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"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinF-PCR2_S12",
"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinF-PCR3_S102",
"jesse-engreitz:in-vitro-system_CRUDO_KITLG-Auxin0hrs-FF1-BinF-PCR4_S108"
],
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],
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],
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{
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"modality": "interference",
"status": "released"
},
{
"@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
"modality": "degradation",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "12",
"status": "released",
"submitted_by": {
"@id": "/users/100f06c6-83a7-4b4d-9dfd-053a1829773b/",
"title": "Benjamin Doughty"
},
"submitted_files_timestamp": "2024-07-03T00:35:35.015510+00:00",
"summary": "cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets",
"uuid": "abb91815-135c-40a7-ac9d-913e34db5334"
}