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INDEXED
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AuxiliarySet
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IGVFDS9108NLTS
IGVFDS9108NLTS
released
Json view
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Aliases
charles-gersbach:cd8-tcells-perturb-seq-crispra-grna-rep1
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2004LGCX
fastq
reads
R2
1
IGVFFI0439ROZG
Illumina NovaSeq 6000
HMCCWDSX3
1
2.6 GB
Charles Gersbach, Duke
validated
IGVFFI3307YHIY
fastq
reads
R2
1
IGVFFI2236HTDI
Illumina NovaSeq 6000
HMCCWDSX3
3
2.6 GB
Charles Gersbach, Duke
validated
IGVFFI3564HSSU
fastq
reads
R1
1
IGVFFI3933DRIM
Illumina NovaSeq 6000
HMCCWDSX3
2
1.4 GB
Charles Gersbach, Duke
validated
IGVFFI5265TJLC
fastq
reads
R1
1
IGVFFI3262QBRS
Illumina NovaSeq 6000
HMCCWDSX3
4
1.4 GB
Charles Gersbach, Duke
validated
IGVFFI8799MGVV
fastq
reads
R1
1
IGVFFI2236HTDI
Illumina NovaSeq 6000
HMCCWDSX3
3
1.4 GB
Charles Gersbach, Duke
validated
IGVFFI9294QFQU
fastq
reads
R2
1
IGVFFI3933DRIM
Illumina NovaSeq 6000
HMCCWDSX3
2
2.6 GB
Charles Gersbach, Duke
validated
IGVFFI9768TMWP
fastq
reads
R1
1
IGVFFI0439ROZG
Illumina NovaSeq 6000
HMCCWDSX3
1
1.4 GB
Charles Gersbach, Duke
validated
IGVFFI9845KVUX
fastq
reads
R2
1
IGVFFI3262QBRS
Illumina NovaSeq 6000
HMCCWDSX3
4
2.6 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM8036VPRU
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS0821YMMV
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO7605NZFO
charles-gersbach:cd8-tcells-donor-6
unspecified
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS0821YMMV
guide (sgRNA) library targeting transcription start sites in 24 genes
IGVFFI1405WMSH
IGVFFI2489BLJI
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6764PIJI
MeasurementSet
CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
charles-gersbach:cd8-tcells-perturb-seq-crispra-gex-rep1
Charles Gersbach, Duke
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5239SBBT
AnalysisSet
activation Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
charles-gersbach:cd8-tcells-analysis-set-perturb-seq-crispra
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke