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IGVFDS8929VNCP

released
File Set Type
gRNA sequencing
Summary
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
Aliases
jay-shendure:CRISPRa_singlecell_K562_VP64_10Xlane2_CS1
Publications

Sequencing Results (Illumina)

6 items
fastq
reads
R1
1
AAAHG2HHV
2
855 MB
Jay Shendure, UW
validated
fastq
reads
I1
1
AAAHG2HHV
2
276 MB
Jay Shendure, UW
validated
fastq
reads
R1
1
AAAHG2HHV
1
892 MB
Jay Shendure, UW
validated
fastq
reads
I1
1
AAAHG2HHV
1
286 MB
Jay Shendure, UW
validated
fastq
reads
R2
1
AAAHG2HHV
1
1.4 GB
Jay Shendure, UW
validated
fastq
reads
R2
1
AAAHG2HHV
2
1.3 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
K562 cell line (cellular sub pool: 10Xlane2), female, Homo sapiens modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_K562
female
Homo sapiens

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
  • jay-shendure:CRISPRa_singlecell_K562_VP64_10Xlane2_exprs
Jay Shendure, UW

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix
  • jay-shendure:analysis_set_CRISPRa_K562
Jay Shendure, UW

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW