{
"@context": "/terms/",
"@id": "/auxiliary-sets/IGVFDS8920TKBO/",
"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS8920TKBO",
"aliases": [
"ansuman-satpathy:multiseq_igvf15_10x3"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"barcode_map": "/tabular-files/IGVFFI6468JUDR/",
"control_for": [],
"creation_timestamp": "2025-01-27T22:55:18.265909+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"aliases": [
"igvf:donor_of_WTC11"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "lipid-conjugated oligo sequencing",
"files": [
{
"@id": "/sequence-files/IGVFFI0711ISSS/",
"accession": "IGVFFI0711ISSS",
"aliases": [
"ansuman-satpathy:igvf_exp15_multi_10x3_NGS2_r2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-01-28T03:43:34.245924+00:00",
"file_format": "fastq",
"file_size": 66622506,
"href": "/sequence-files/IGVFFI0711ISSS/@@download/IGVFFI0711ISSS.fastq.gz",
"s3_uri": "s3://igvf-files/2025/01/28/75aef80b-76c3-478c-8882-5a2ee1650819/IGVFFI0711ISSS.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/MULTI/CMAS17_MULTI3_S6_L002_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5696GHAL/",
"accession": "IGVFFI5696GHAL",
"aliases": [
"ansuman-satpathy:igvf_exp15_multi_10x3_NGS2_i1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-01-28T03:43:20.526500+00:00",
"file_format": "fastq",
"file_size": 11627216,
"href": "/sequence-files/IGVFFI5696GHAL/@@download/IGVFFI5696GHAL.fastq.gz",
"s3_uri": "s3://igvf-files/2025/01/28/f921dba0-765a-4cbd-a44c-0b8ed9d8a69c/IGVFFI5696GHAL.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/MULTI/CMAS17_MULTI3_S6_L002_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8459IKHD/",
"accession": "IGVFFI8459IKHD",
"aliases": [
"ansuman-satpathy:igvf_exp15_multi_10x3_NGS1_r2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-01-28T03:43:10.866790+00:00",
"file_format": "fastq",
"file_size": 182151016,
"href": "/sequence-files/IGVFFI8459IKHD/@@download/IGVFFI8459IKHD.fastq.gz",
"s3_uri": "s3://igvf-files/2025/01/28/129e9e93-9a90-4d85-b9dc-42ec9d090af1/IGVFFI8459IKHD.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/MULTI/CMAS17_MULTI3_S6_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4921GNSS/",
"accession": "IGVFFI4921GNSS",
"aliases": [
"ansuman-satpathy:igvf_exp15_multi_10x3_NGS2_i2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-01-28T03:43:24.772961+00:00",
"file_format": "fastq",
"file_size": 11075090,
"href": "/sequence-files/IGVFFI4921GNSS/@@download/IGVFFI4921GNSS.fastq.gz",
"s3_uri": "s3://igvf-files/2025/01/28/b22d1058-394c-4b8a-8a54-2984643b5864/IGVFFI4921GNSS.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/MULTI/CMAS17_MULTI3_S6_L002_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3268IVRJ/",
"accession": "IGVFFI3268IVRJ",
"aliases": [
"ansuman-satpathy:igvf_exp15_multi_10x3_NGS2_r1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-01-28T03:43:28.911066+00:00",
"file_format": "fastq",
"file_size": 30332514,
"href": "/sequence-files/IGVFFI3268IVRJ/@@download/IGVFFI3268IVRJ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/01/28/6d96cd33-70b8-4d29-8611-abfa90b76fa3/IGVFFI3268IVRJ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/MULTI/CMAS17_MULTI3_S6_L002_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9181PPCP/",
"accession": "IGVFFI9181PPCP",
"aliases": [
"ansuman-satpathy:igvf_exp15_multi_10x3_NGS1_r1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-01-28T03:43:03.588555+00:00",
"file_format": "fastq",
"file_size": 80835575,
"href": "/sequence-files/IGVFFI9181PPCP/@@download/IGVFFI9181PPCP.fastq.gz",
"s3_uri": "s3://igvf-files/2025/01/28/284cae22-93ee-4a02-8010-1c0104098751/IGVFFI9181PPCP.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/MULTI/CMAS17_MULTI3_S6_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4704XQHF/",
"accession": "IGVFFI4704XQHF",
"aliases": [
"ansuman-satpathy:igvf_exp15_multi_10x3_NGS1_i2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-01-28T03:42:58.888321+00:00",
"file_format": "fastq",
"file_size": 27924258,
"href": "/sequence-files/IGVFFI4704XQHF/@@download/IGVFFI4704XQHF.fastq.gz",
"s3_uri": "s3://igvf-files/2025/01/28/edfb33cc-fddd-479e-a1c1-f958582cd2ae/IGVFFI4704XQHF.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/MULTI/CMAS17_MULTI3_S6_L001_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6305TFQF/",
"accession": "IGVFFI6305TFQF",
"aliases": [
"ansuman-satpathy:igvf_exp15_multi_10x3_NGS1_i1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-01-28T03:42:54.370380+00:00",
"file_format": "fastq",
"file_size": 31074651,
"href": "/sequence-files/IGVFFI6305TFQF/@@download/IGVFFI6305TFQF.fastq.gz",
"s3_uri": "s3://igvf-files/2025/01/28/5584390f-f326-4324-b841-e1cf0fad6726/IGVFFI6305TFQF.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/MULTI/CMAS17_MULTI3_S6_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2485JQSW/",
"accession": "IGVFFI2485JQSW",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp15_multi_10x3_NGS2"
],
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:44:34.857560+00:00",
"file_format": "yaml",
"file_size": 1338,
"href": "/configuration-files/IGVFFI2485JQSW/@@download/IGVFFI2485JQSW.yaml.gz",
"s3_uri": "s3://igvf-files/2025/02/26/bfbb924c-fb2b-4123-b616-96d1dbe3992f/IGVFFI2485JQSW.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp15_multi_10x3_NGS2_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4092LIBE/",
"accession": "IGVFFI4092LIBE",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp15_multi_10x3_NGS1"
],
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:44:31.003561+00:00",
"file_format": "yaml",
"file_size": 1335,
"href": "/configuration-files/IGVFFI4092LIBE/@@download/IGVFFI4092LIBE.yaml.gz",
"s3_uri": "s3://igvf-files/2025/02/26/17c8be50-d3f1-4b26-9215-c786a31e8899/IGVFFI4092LIBE.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp15_multi_10x3_NGS1_multi_seqspec.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS6039JXBR/"
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS8563NWFI/",
"accession": "IGVFDS8563NWFI",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf15_10x3"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS8608TBPZ/",
"accession": "IGVFDS8608TBPZ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf15_10x3"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
}
],
"release_timestamp": "2025-03-07T01:14:58.076045+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM1624SZQN/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1624SZQN",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf15_10x3"
],
"cellular_sub_pool": "3",
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:WTC11"
],
"status": "released",
"summary": "GM25256 (WTC-11)",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "12",
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_files_timestamp": "2025-01-28T03:42:54.370380+00:00",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)",
"uuid": "06f72d9b-b2ff-4bec-9d52-d93410217c32"
}