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IGVFDS8839RSIR

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
cell hashing barcode sequencing
Summary
cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:CM_Pilot_2_Mini_HTO_Lenti_LW272

Sequencing Results (Illumina)

4 items
fastq
reads
R1
2
AAF5CKNM5
1
1.0 GB
Gary Hon, UT
validated
fastq
reads
I1
2
AAF5CKNM5
1
355 MB
Gary Hon, UT
validated
fastq
reads
R2
2
AAF5CKNM5
1
2.0 GB
Gary Hon, UT
validated
fastq
reads
I2
2
AAF5CKNM5
1
351 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW272), female, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_H9
female
Homo sapiens

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:CM_Pilot_2_Mini_Lenti_LW272
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
  • gary-hon:H9_shen_construct_sgRNA_Lenti_PrimaryAnalysis
Gary Hon, UT

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT