{
"@context": "/terms/",
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"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
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"aliases": [
"jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin0hrs-Rep2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released human donor [IGVFDO0384OZRW](/human-donors/IGVFDO0384OZRW/) has in progress subobject publication [155f24ce-5c2c-4400-8651-da9447eaca25](/publications/155f24ce-5c2c-4400-8651-da9447eaca25/).",
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"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0384OZRW/"
}
],
"WARNING": [
{
"category": "missing sequencing kit",
"detail": "Auxiliary set [IGVFDS8748OHPQ](/auxiliary-sets/IGVFDS8748OHPQ/) has sequence file(s) [IGVFFI2315CHAW](/sequence-files/IGVFFI2315CHAW/), [IGVFFI6591FOMG](/sequence-files/IGVFFI6591FOMG/), [IGVFFI1413KOZF](/sequence-files/IGVFFI1413KOZF/), [IGVFFI2373VGQQ](/sequence-files/IGVFFI2373VGQQ/), [IGVFFI5632DOTG](/sequence-files/IGVFFI5632DOTG/), [IGVFFI0448FLMO](/sequence-files/IGVFFI0448FLMO/), [IGVFFI5285IRWT](/sequence-files/IGVFFI5285IRWT/), [IGVFFI8825PYZU](/sequence-files/IGVFFI8825PYZU/), [IGVFFI6297ZONU](/sequence-files/IGVFFI6297ZONU/), [IGVFFI6523ECXR](/sequence-files/IGVFFI6523ECXR/), [IGVFFI7983EOQT](/sequence-files/IGVFFI7983EOQT/), [IGVFFI1717NNGG](/sequence-files/IGVFFI1717NNGG/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 40,
"level_name": "WARNING",
"name": "audit_inconsistent_sequencing_kit",
"path": "/auxiliary-sets/IGVFDS8748OHPQ/"
}
]
},
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},
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},
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{
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],
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}
],
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
{
"@id": "/configuration-files/IGVFFI9276QSJE/",
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},
{
"@id": "/configuration-files/IGVFFI3251EWWP/",
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},
{
"@id": "/configuration-files/IGVFFI3677HPJG/",
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"upload_status": "validated"
}
],
"input_file_set_for": [
"/analysis-sets/IGVFDS5308EMCG/"
],
"lab": {
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"title": "Jesse Engreitz, Stanford"
},
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{
"@id": "/measurement-sets/IGVFDS7135ULJC/",
"accession": "IGVFDS7135ULJC",
"aliases": [
"jesse-engreitz:measurement_CRUDO_TAPseq-Auxin0hrs-Rep2"
],
"preferred_assay_title": "TAP-seq"
}
],
"release_timestamp": "2024-07-10T20:26:40.826800+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM0767GJUV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0767GJUV",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_TAPseq-Auxin0hrs-Rep2"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS9869EMNE/"
],
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"/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/"
],
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{
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"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens"
}
],
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"status": "released",
"submitted_by": {
"@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
"title": "Chongyon Park"
},
"submitted_files_timestamp": "2024-06-03T19:16:18.076512+00:00",
"summary": "gRNA sequencing for TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci",
"uuid": "48fc2f77-3f9d-4698-9512-7b37e979382b"
}