IGVFDS8561MVXS

1{
2    "@context": "/terms/",
3    "@id": "/auxiliary-sets/IGVFDS8561MVXS/",
4    "@type": [
5        "AuxiliarySet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS8561MVXS",
10    "aliases": [
11        "ansuman-satpathy:multiseq_igvf16_10x4"
12    ],
13    "audit": {
14        "INTERNAL_ACTION": [
15            {
16                "category": "mismatched status",
17                "detail": "Released multiplexed sample [IGVFSM5245KVZO](/multiplexed-samples/IGVFSM5245KVZO/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
18                "level": 30,
19                "level_name": "INTERNAL_ACTION",
20                "name": "audit_item_status",
21                "path": "/multiplexed-samples/IGVFSM5245KVZO/"
22            },
23            {
24                "category": "mismatched status",
25                "detail": "Released auxiliary set [IGVFDS8561MVXS](/auxiliary-sets/IGVFDS8561MVXS/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_item_status",
29                "path": "/auxiliary-sets/IGVFDS8561MVXS/"
30            }
31        ]
32    },
33    "award": {
34        "@id": "/awards/HG012076/",
35        "component": "mapping",
36        "contact_pi": {
37            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
38            "title": "Ansuman Satpathy"
39        },
40        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
41    },
42    "barcode_map": "/tabular-files/IGVFFI2383CFVI/",
43    "control_for": [],
44    "controlled_access": true,
45    "creation_timestamp": "2025-02-03T21:18:08.142915+00:00",
46    "data_use_limitation_summaries": [
47        "GRU"
48    ],
49    "donors": [
50        {
51            "@id": "/human-donors/IGVFDO9716HDYX/",
52            "accession": "IGVFDO9716HDYX",
53            "aliases": [
54                "ansuman-satpathy:donor_of_A002",
55                "igvf:donor_A002"
56            ],
57            "sex": "male",
58            "status": "released",
59            "taxa": "Homo sapiens"
60        },
61        {
62            "@id": "/human-donors/IGVFDO9617JBWJ/",
63            "accession": "IGVFDO9617JBWJ",
64            "aliases": [
65                "ansuman-satpathy:donor_of_B002",
66                "igvf:donor_B002"
67            ],
68            "sex": "female",
69            "status": "released",
70            "taxa": "Homo sapiens"
71        },
72        {
73            "@id": "/human-donors/IGVFDO0183MFIP/",
74            "accession": "IGVFDO0183MFIP",
75            "aliases": [
76                "ansuman-satpathy:donor_of_KOLF2.2J",
77                "igvf:donor_KOLF2.2J"
78            ],
79            "sex": "male",
80            "status": "released",
81            "taxa": "Homo sapiens"
82        },
83        {
84            "@id": "/human-donors/IGVFDO7140TLQJ/",
85            "accession": "IGVFDO7140TLQJ",
86            "aliases": [
87                "ansuman-satpathy:donor_of_Hues9",
88                "igvf:donor_Hues9"
89            ],
90            "sex": "female",
91            "status": "released",
92            "taxa": "Homo sapiens"
93        },
94        {
95            "@id": "/human-donors/IGVFDO8977PNMK/",
96            "accession": "IGVFDO8977PNMK",
97            "aliases": [
98                "ansuman-satpathy:donor_of_C001",
99                "igvf:donor_C001"
100            ],
101            "sex": "female",
102            "status": "released",
103            "taxa": "Homo sapiens"
104        },
105        {
106            "@id": "/human-donors/IGVFDO7470LCGC/",
107            "accession": "IGVFDO7470LCGC",
108            "aliases": [
109                "ansuman-satpathy:donor_of_WA25",
110                "igvf:donor_WA25"
111            ],
112            "sex": "female",
113            "status": "released",
114            "taxa": "Homo sapiens"
115        },
116        {
117            "@id": "/human-donors/IGVFDO5614PTYQ/",
118            "accession": "IGVFDO5614PTYQ",
119            "aliases": [
120                "ansuman-satpathy:donor_of_A004",
121                "igvf:donor_A004"
122            ],
123            "sex": "male",
124            "status": "released",
125            "taxa": "Homo sapiens"
126        },
127        {
128            "@id": "/human-donors/IGVFDO0720ONIQ/",
129            "accession": "IGVFDO0720ONIQ",
130            "aliases": [
131                "ansuman-satpathy:donor_of_C004",
132                "igvf:donor_C004"
133            ],
134            "sex": "female",
135            "status": "released",
136            "taxa": "Homo sapiens"
137        },
138        {
139            "@id": "/human-donors/IGVFDO2817PSCX/",
140            "accession": "IGVFDO2817PSCX",
141            "aliases": [
142                "ansuman-satpathy:donor_of_A009",
143                "igvf:donor_A009"
144            ],
145            "sex": "female",
146            "status": "released",
147            "taxa": "Homo sapiens"
148        },
149        {
150            "@id": "/human-donors/IGVFDO9904ZSML/",
151            "accession": "IGVFDO9904ZSML",
152            "aliases": [
153                "ansuman-satpathy:donor_of_RUES1",
154                "igvf:donor_RUES1"
155            ],
156            "sex": "male",
157            "status": "released",
158            "taxa": "Homo sapiens"
159        },
160        {
161            "@id": "/human-donors/IGVFDO2650AGWB/",
162            "accession": "IGVFDO2650AGWB",
163            "aliases": [
164                "ansuman-satpathy:donor_of_WA14",
165                "igvf:donor_WA14"
166            ],
167            "sex": "male",
168            "status": "released",
169            "taxa": "Homo sapiens"
170        },
171        {
172            "@id": "/human-donors/IGVFDO2750DZPB/",
173            "accession": "IGVFDO2750DZPB",
174            "aliases": [
175                "ansuman-satpathy:donor_of_B007",
176                "igvf:donor_B007"
177            ],
178            "sex": "male",
179            "status": "released",
180            "taxa": "Homo sapiens"
181        },
182        {
183            "@id": "/human-donors/IGVFDO6162MIWK/",
184            "accession": "IGVFDO6162MIWK",
185            "aliases": [
186                "ansuman-satpathy:donor_of_WA26",
187                "igvf:donor_WA26"
188            ],
189            "sex": "female",
190            "status": "released",
191            "taxa": "Homo sapiens"
192        },
193        {
194            "@id": "/human-donors/IGVFDO7725MEWB/",
195            "accession": "IGVFDO7725MEWB",
196            "aliases": [
197                "ansuman-satpathy:donor_of_GM00731",
198                "igvf:donor_GM00731"
199            ],
200            "sex": "male",
201            "status": "released",
202            "taxa": "Homo sapiens"
203        },
204        {
205            "@id": "/human-donors/IGVFDO1364EAZP/",
206            "accession": "IGVFDO1364EAZP",
207            "aliases": [
208                "ansuman-satpathy:donor_of_PENN086i-278-1",
209                "igvf:donor_PENN086i-278-1"
210            ],
211            "sex": "male",
212            "status": "released",
213            "taxa": "Homo sapiens"
214        },
215        {
216            "@id": "/human-donors/IGVFDO6441FSJH/",
217            "accession": "IGVFDO6441FSJH",
218            "aliases": [
219                "ansuman-satpathy:donor_of_A003",
220                "igvf:donor_A003"
221            ],
222            "sex": "female",
223            "status": "released",
224            "taxa": "Homo sapiens"
225        },
226        {
227            "@id": "/human-donors/IGVFDO2965ZTUG/",
228            "accession": "IGVFDO2965ZTUG",
229            "aliases": [
230                "ansuman-satpathy:donor_of_GM01680",
231                "igvf:donor_GM01680"
232            ],
233            "sex": "female",
234            "status": "released",
235            "taxa": "Homo sapiens"
236        },
237        {
238            "@id": "/human-donors/IGVFDO8129FWUV/",
239            "accession": "IGVFDO8129FWUV",
240            "aliases": [
241                "ansuman-satpathy:donor_of_B011",
242                "igvf:donor_B011"
243            ],
244            "sex": "female",
245            "status": "released",
246            "taxa": "Homo sapiens"
247        },
248        {
249            "@id": "/human-donors/IGVFDO1038DAII/",
250            "accession": "IGVFDO1038DAII",
251            "aliases": [
252                "ansuman-satpathy:donor_of_Hues6",
253                "igvf:donor_Hues6"
254            ],
255            "sex": "female",
256            "status": "released",
257            "taxa": "Homo sapiens"
258        },
259        {
260            "@id": "/human-donors/IGVFDO4532PFAJ/",
261            "accession": "IGVFDO4532PFAJ",
262            "aliases": [
263                "ansuman-satpathy:donor_of_A010",
264                "igvf:donor_A010"
265            ],
266            "sex": "female",
267            "status": "released",
268            "taxa": "Homo sapiens"
269        },
270        {
271            "@id": "/human-donors/IGVFDO0657EMJH/",
272            "accession": "IGVFDO0657EMJH",
273            "aliases": [
274                "ansuman-satpathy:donor_of_GM01652",
275                "igvf:donor_GM01652"
276            ],
277            "sex": "female",
278            "status": "released",
279            "taxa": "Homo sapiens"
280        },
281        {
282            "@id": "/human-donors/IGVFDO2620HPCX/",
283            "accession": "IGVFDO2620HPCX",
284            "aliases": [
285                "ansuman-satpathy:donor_of_B003",
286                "igvf:donor_B003"
287            ],
288            "sex": "female",
289            "status": "released",
290            "taxa": "Homo sapiens"
291        },
292        {
293            "@id": "/human-donors/IGVFDO7813GMND/",
294            "accession": "IGVFDO7813GMND",
295            "aliases": [
296                "ansuman-satpathy:donor_of_A001",
297                "igvf:donor_A001"
298            ],
299            "sex": "female",
300            "status": "released",
301            "taxa": "Homo sapiens"
302        },
303        {
304            "@id": "/human-donors/IGVFDO7670TOWV/",
305            "accession": "IGVFDO7670TOWV",
306            "aliases": [
307                "ansuman-satpathy:donor_of_B012",
308                "igvf:donor_B012"
309            ],
310            "sex": "female",
311            "status": "released",
312            "taxa": "Homo sapiens"
313        },
314        {
315            "@id": "/human-donors/IGVFDO8129UUAA/",
316            "accession": "IGVFDO8129UUAA",
317            "aliases": [
318                "ansuman-satpathy:donor_of_C008",
319                "igvf:donor_C008"
320            ],
321            "sex": "female",
322            "status": "released",
323            "taxa": "Homo sapiens"
324        },
325        {
326            "@id": "/human-donors/IGVFDO5729MXSO/",
327            "accession": "IGVFDO5729MXSO",
328            "aliases": [
329                "ansuman-satpathy:donor_of_B008",
330                "igvf:donor_B008"
331            ],
332            "sex": "female",
333            "status": "released",
334            "taxa": "Homo sapiens"
335        },
336        {
337            "@id": "/human-donors/IGVFDO4452ZQSF/",
338            "accession": "IGVFDO4452ZQSF",
339            "aliases": [
340                "ansuman-satpathy:donor_of_B010",
341                "igvf:donor_B010"
342            ],
343            "sex": "male",
344            "status": "released",
345            "taxa": "Homo sapiens"
346        },
347        {
348            "@id": "/human-donors/IGVFDO4134ZWBU/",
349            "accession": "IGVFDO4134ZWBU",
350            "aliases": [
351                "ansuman-satpathy:donor_of_B005",
352                "igvf:donor_B005"
353            ],
354            "sex": "male",
355            "status": "released",
356            "taxa": "Homo sapiens"
357        },
358        {
359            "@id": "/human-donors/IGVFDO8315PGTI/",
360            "accession": "IGVFDO8315PGTI",
361            "aliases": [
362                "igvf:donor_HUES8"
363            ],
364            "sex": "male",
365            "status": "released",
366            "taxa": "Homo sapiens"
367        },
368        {
369            "@id": "/human-donors/IGVFDO2718IDDQ/",
370            "accession": "IGVFDO2718IDDQ",
371            "aliases": [
372                "igvf:donor_of_H9"
373            ],
374            "sex": "female",
375            "status": "released",
376            "taxa": "Homo sapiens"
377        },
378        {
379            "@id": "/human-donors/IGVFDO2492CCQG/",
380            "accession": "IGVFDO2492CCQG",
381            "aliases": [
382                "ansuman-satpathy:donor_of_B004",
383                "igvf:donor_B004"
384            ],
385            "sex": "female",
386            "status": "released",
387            "taxa": "Homo sapiens"
388        },
389        {
390            "@id": "/human-donors/IGVFDO0324ZSAY/",
391            "accession": "IGVFDO0324ZSAY",
392            "aliases": [
393                "ansuman-satpathy:donor_of_PENN020i-588-6",
394                "igvf:donor_PENN0201-588-6"
395            ],
396            "sex": "female",
397            "status": "released",
398            "taxa": "Homo sapiens"
399        },
400        {
401            "@id": "/human-donors/IGVFDO5261UCLF/",
402            "accession": "IGVFDO5261UCLF",
403            "aliases": [
404                "igvf:donor_of_RUES2",
405                "igvf:donor_RUES2"
406            ],
407            "sex": "female",
408            "status": "released",
409            "taxa": "Homo sapiens"
410        },
411        {
412            "@id": "/human-donors/IGVFDO6638HIAD/",
413            "accession": "IGVFDO6638HIAD",
414            "aliases": [
415                "igvf:donor_of_H1"
416            ],
417            "sex": "male",
418            "status": "released",
419            "taxa": "Homo sapiens"
420        },
421        {
422            "@id": "/human-donors/IGVFDO1221XJAX/",
423            "accession": "IGVFDO1221XJAX",
424            "aliases": [
425                "ansuman-satpathy:donor_of_WA13",
426                "igvf:donor_WA13"
427            ],
428            "sex": "male",
429            "status": "released",
430            "taxa": "Homo sapiens"
431        },
432        {
433            "@id": "/human-donors/IGVFDO2379DTAU/",
434            "accession": "IGVFDO2379DTAU",
435            "aliases": [
436                "ansuman-satpathy:donor_of_A007",
437                "igvf:donor_A007"
438            ],
439            "sex": "female",
440            "status": "released",
441            "taxa": "Homo sapiens"
442        },
443        {
444            "@id": "/human-donors/IGVFDO3755LIBB/",
445            "accession": "IGVFDO3755LIBB",
446            "aliases": [
447                "ansuman-satpathy:donor_of_A006",
448                "igvf:donor_A006"
449            ],
450            "sex": "male",
451            "status": "released",
452            "taxa": "Homo sapiens"
453        },
454        {
455            "@id": "/human-donors/IGVFDO6169GISQ/",
456            "accession": "IGVFDO6169GISQ",
457            "aliases": [
458                "ansuman-satpathy:donor_of_B009",
459                "igvf:donor_B009"
460            ],
461            "sex": "male",
462            "status": "released",
463            "taxa": "Homo sapiens"
464        },
465        {
466            "@id": "/human-donors/IGVFDO7650ICPB/",
467            "accession": "IGVFDO7650ICPB",
468            "aliases": [
469                "ansuman-satpathy:donor_of_B001",
470                "igvf:donor_B001"
471            ],
472            "sex": "male",
473            "status": "released",
474            "taxa": "Homo sapiens"
475        },
476        {
477            "@id": "/human-donors/IGVFDO8893DMFF/",
478            "accession": "IGVFDO8893DMFF",
479            "aliases": [
480                "ansuman-satpathy:donor_of_B006",
481                "igvf:donor_B006"
482            ],
483            "sex": "male",
484            "status": "released",
485            "taxa": "Homo sapiens"
486        },
487        {
488            "@id": "/human-donors/IGVFDO1964RNHE/",
489            "accession": "IGVFDO1964RNHE",
490            "aliases": [
491                "ansuman-satpathy:donor_of_C003",
492                "igvf:donor_C003"
493            ],
494            "sex": "male",
495            "status": "released",
496            "taxa": "Homo sapiens"
497        },
498        {
499            "@id": "/human-donors/IGVFDO4001VEAC/",
500            "accession": "IGVFDO4001VEAC",
501            "aliases": [
502                "ansuman-satpathy:donor_of_XM001",
503                "igvf:donor_XM001"
504            ],
505            "sex": "female",
506            "status": "released",
507            "taxa": "Homo sapiens"
508        },
509        {
510            "@id": "/human-donors/IGVFDO4876ENMD/",
511            "accession": "IGVFDO4876ENMD",
512            "aliases": [
513                "ansuman-satpathy:donor_of_C007",
514                "igvf:donor_C007"
515            ],
516            "sex": "female",
517            "status": "released",
518            "taxa": "Homo sapiens"
519        },
520        {
521            "@id": "/human-donors/IGVFDO5656YCPC/",
522            "accession": "IGVFDO5656YCPC",
523            "aliases": [
524                "ansuman-satpathy:donor_of_Mel-1",
525                "igvf:donor_Mel-1"
526            ],
527            "sex": "male",
528            "status": "released",
529            "taxa": "Homo sapiens"
530        }
531    ],
532    "file_set_type": "lipid-conjugated oligo sequencing",
533    "files": [
534        {
535            "@id": "/sequence-files/IGVFFI5723DRHI/",
536            "accession": "IGVFFI5723DRHI",
537            "aliases": [
538                "ansuman-satpathy:igvf_exp16_multi_10x4_NGS2_r1"
539            ],
540            "content_type": "reads",
541            "controlled_access": true,
542            "creation_timestamp": "2025-02-03T23:09:32.335949+00:00",
543            "file_format": "fastq",
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547            "sequencing_platform": "/platform-terms/EFO_0022840/",
548            "status": "released",
549            "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/MULTI/CMAS18_MULTI4_S15_L004_R1_001.fastq.gz",
550            "upload_status": "validated"
551        },
552        {
553            "@id": "/sequence-files/IGVFFI8893SDRY/",
554            "accession": "IGVFFI8893SDRY",
555            "aliases": [
556                "ansuman-satpathy:igvf_exp16_multi_10x4_NGS3_i2"
557            ],
558            "content_type": "reads",
559            "controlled_access": true,
560            "creation_timestamp": "2025-02-03T23:10:00.774270+00:00",
561            "file_format": "fastq",
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565            "sequencing_platform": "/platform-terms/EFO_0022840/",
566            "status": "released",
567            "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/MULTI/CMAS18_MULTI4_S15_L005_I2_001.fastq.gz",
568            "upload_status": "validated"
569        },
570        {
571            "@id": "/sequence-files/IGVFFI9263EMKY/",
572            "accession": "IGVFFI9263EMKY",
573            "aliases": [
574                "ansuman-satpathy:igvf_exp16_multi_10x4_NGS1_r2"
575            ],
576            "content_type": "reads",
577            "controlled_access": true,
578            "creation_timestamp": "2025-02-03T23:09:05.157795+00:00",
579            "file_format": "fastq",
580            "file_size": 420217394,
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583            "sequencing_platform": "/platform-terms/EFO_0022840/",
584            "status": "released",
585            "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/MULTI/CMAS18_MULTI4_S15_L003_R2_001.fastq.gz",
586            "upload_status": "validated"
587        },
588        {
589            "@id": "/sequence-files/IGVFFI3122LIOE/",
590            "accession": "IGVFFI3122LIOE",
591            "aliases": [
592                "ansuman-satpathy:igvf_exp16_multi_10x4_NGS1_r1"
593            ],
594            "content_type": "reads",
595            "controlled_access": true,
596            "creation_timestamp": "2025-02-03T23:08:55.425526+00:00",
597            "file_format": "fastq",
598            "file_size": 182665789,
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600            "s3_uri": "s3://igvf-restricted-files/2025/02/03/13dbc811-f364-440d-b6ac-e41450bc270d/IGVFFI3122LIOE.fastq.gz",
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