{
"@context": "/terms/",
"@id": "/auxiliary-sets/IGVFDS8349EMBV/",
"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS8349EMBV",
"aliases": [
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep1_S113",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep2_S168",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep1_S119",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep2_S174",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep1_S125",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep2_S180",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep1_S131",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep2_S186"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released human donor [IGVFDO0384OZRW](/human-donors/IGVFDO0384OZRW/) has in progress subobject publication [155f24ce-5c2c-4400-8651-da9447eaca25](/publications/155f24ce-5c2c-4400-8651-da9447eaca25/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0384OZRW/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3296OBHK](/in-vitro-systems/IGVFSM3296OBHK/) has in progress subobject degron modification [95081d1b-08b4-49ed-b324-e53fc43d8456](/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3296OBHK/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM3296OBHK](/in-vitro-systems/IGVFSM3296OBHK/) has in progress subobject treatment [d35868d1-c45b-49ae-8ff3-a9c0c22551c2](/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM3296OBHK/"
}
],
"WARNING": [
{
"category": "missing sequencing kit",
"detail": "Auxiliary set [IGVFDS8349EMBV](/auxiliary-sets/IGVFDS8349EMBV/) has sequence file(s) [IGVFFI6439DTIW](/sequence-files/IGVFFI6439DTIW/), [IGVFFI4955BTQI](/sequence-files/IGVFFI4955BTQI/), [IGVFFI4270WMJY](/sequence-files/IGVFFI4270WMJY/), [IGVFFI9411SKQQ](/sequence-files/IGVFFI9411SKQQ/), [IGVFFI2400OIYG](/sequence-files/IGVFFI2400OIYG/), [IGVFFI3236EOMO](/sequence-files/IGVFFI3236EOMO/), [IGVFFI3855ICMO](/sequence-files/IGVFFI3855ICMO/), [IGVFFI8078ZIFD](/sequence-files/IGVFFI8078ZIFD/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 40,
"level_name": "WARNING",
"name": "audit_inconsistent_sequencing_kit",
"path": "/auxiliary-sets/IGVFDS8349EMBV/"
},
{
"category": "missing analysis",
"detail": "Auxiliary set [IGVFDS8349EMBV](/auxiliary-sets/IGVFDS8349EMBV/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_file_set_for",
"path": "/auxiliary-sets/IGVFDS8349EMBV/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_for": [],
"creation_timestamp": "2024-05-21T17:39:08.270351+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO0384OZRW/",
"accession": "IGVFDO0384OZRW",
"aliases": [
"igvf:donor_of_HCT116"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "gRNA sequencing",
"files": [
{
"@id": "/sequence-files/IGVFFI6439DTIW/",
"accession": "IGVFFI6439DTIW",
"aliases": [
"jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep1_S113"
],
"content_type": "reads",
"creation_timestamp": "2024-06-01T02:03:41.823464+00:00",
"file_format": "fastq",
"file_size": 23921296,
"href": "/sequence-files/IGVFFI6439DTIW/@@download/IGVFFI6439DTIW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/01/2c33c763-d17b-4bab-bfc9-b357527c9546/IGVFFI6439DTIW.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0008565/",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinC-PCR1-Rep1_S113_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3511CDMV/",
"accession": "IGVFFI3511CDMV",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep1_S113"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:49:26.217195+00:00",
"file_format": "yaml",
"file_size": 911,
"href": "/configuration-files/IGVFFI3511CDMV/@@download/IGVFFI3511CDMV.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/11/e7e0d204-1c2a-4176-9e4e-21c58a28e4c5/IGVFFI3511CDMV.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin6hrs-FF1-BinC-PCR1_Rep1_S113.yaml",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4955BTQI/",
"accession": "IGVFFI4955BTQI",
"aliases": [
"jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep2_S186"
],
"content_type": "reads",
"creation_timestamp": "2024-06-01T02:05:59.520176+00:00",
"file_format": "fastq",
"file_size": 23622351,
"href": "/sequence-files/IGVFFI4955BTQI/@@download/IGVFFI4955BTQI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/01/7b604b43-1b7e-462f-89a2-407f89a4064b/IGVFFI4955BTQI.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0008565/",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinC-PCR4-Rep2_S186_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7825FLAC/",
"accession": "IGVFFI7825FLAC",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep2_S168"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:49:40.903590+00:00",
"file_format": "yaml",
"file_size": 912,
"href": "/configuration-files/IGVFFI7825FLAC/@@download/IGVFFI7825FLAC.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/11/2d4d72ba-3b0e-4b94-a00d-7269c90467bb/IGVFFI7825FLAC.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin6hrs-FF1-BinC-PCR1_Rep2_S168.yaml",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4270WMJY/",
"accession": "IGVFFI4270WMJY",
"aliases": [
"jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep1_S125"
],
"content_type": "reads",
"creation_timestamp": "2024-06-01T02:05:03.017780+00:00",
"file_format": "fastq",
"file_size": 19864336,
"href": "/sequence-files/IGVFFI4270WMJY/@@download/IGVFFI4270WMJY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/01/14b69211-791a-4e5e-a8be-5a73cfd86a66/IGVFFI4270WMJY.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0008565/",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinC-PCR3-Rep1_S125_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9411SKQQ/",
"accession": "IGVFFI9411SKQQ",
"aliases": [
"jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep2_S168"
],
"content_type": "reads",
"creation_timestamp": "2024-06-01T02:04:02.124239+00:00",
"file_format": "fastq",
"file_size": 17102381,
"href": "/sequence-files/IGVFFI9411SKQQ/@@download/IGVFFI9411SKQQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/01/f652ac10-704a-47d0-bdc4-205167f8643d/IGVFFI9411SKQQ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0008565/",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinC-PCR1-Rep2_S168_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2400OIYG/",
"accession": "IGVFFI2400OIYG",
"aliases": [
"jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep1_S119"
],
"content_type": "reads",
"creation_timestamp": "2024-06-01T02:04:22.078630+00:00",
"file_format": "fastq",
"file_size": 27624846,
"href": "/sequence-files/IGVFFI2400OIYG/@@download/IGVFFI2400OIYG.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/01/d96352ec-3e46-432d-8a14-c8b2f1242fac/IGVFFI2400OIYG.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0008565/",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinC-PCR2-Rep1_S119_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3236EOMO/",
"accession": "IGVFFI3236EOMO",
"aliases": [
"jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep2_S174"
],
"content_type": "reads",
"creation_timestamp": "2024-06-01T02:04:42.871242+00:00",
"file_format": "fastq",
"file_size": 22383603,
"href": "/sequence-files/IGVFFI3236EOMO/@@download/IGVFFI3236EOMO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/01/c270e68d-abf3-439e-9824-10bc5d1c0b6d/IGVFFI3236EOMO.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0008565/",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinC-PCR2-Rep2_S174_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3855ICMO/",
"accession": "IGVFFI3855ICMO",
"aliases": [
"jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep1_S131"
],
"content_type": "reads",
"creation_timestamp": "2024-06-01T02:05:40.616063+00:00",
"file_format": "fastq",
"file_size": 28662168,
"href": "/sequence-files/IGVFFI3855ICMO/@@download/IGVFFI3855ICMO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/01/34ae20ef-3395-4189-9068-05e9773841c9/IGVFFI3855ICMO.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0008565/",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinC-PCR4-Rep1_S131_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4106TIWV/",
"accession": "IGVFFI4106TIWV",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep1_S125"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:50:25.268591+00:00",
"file_format": "yaml",
"file_size": 913,
"href": "/configuration-files/IGVFFI4106TIWV/@@download/IGVFFI4106TIWV.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/11/4f92da19-9ca6-4436-8fcd-a57ae333bd8e/IGVFFI4106TIWV.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin6hrs-FF1-BinC-PCR3_Rep1_S125.yaml",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8078ZIFD/",
"accession": "IGVFFI8078ZIFD",
"aliases": [
"jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep2_S180"
],
"content_type": "reads",
"creation_timestamp": "2024-06-01T02:05:22.210021+00:00",
"file_format": "fastq",
"file_size": 25941855,
"href": "/sequence-files/IGVFFI8078ZIFD/@@download/IGVFFI8078ZIFD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/06/01/d9f52033-4b04-4885-acba-00984fb11beb/IGVFFI8078ZIFD.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0008565/",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinC-PCR3-Rep2_S180_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2456ADVB/",
"accession": "IGVFFI2456ADVB",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep1_S131"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:50:54.709529+00:00",
"file_format": "yaml",
"file_size": 911,
"href": "/configuration-files/IGVFFI2456ADVB/@@download/IGVFFI2456ADVB.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/11/b211766c-393a-4647-8d37-e14099379247/IGVFFI2456ADVB.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin6hrs-FF1-BinC-PCR4_Rep1_S131.yaml",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6918QVQL/",
"accession": "IGVFFI6918QVQL",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep1_S119"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:49:55.613366+00:00",
"file_format": "yaml",
"file_size": 912,
"href": "/configuration-files/IGVFFI6918QVQL/@@download/IGVFFI6918QVQL.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/11/ce442d3f-5c22-4088-8a8f-ba2fcbef7013/IGVFFI6918QVQL.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin6hrs-FF1-BinC-PCR2_Rep1_S119.yaml",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3574SVFD/",
"accession": "IGVFFI3574SVFD",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep2_S186"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:51:11.264947+00:00",
"file_format": "yaml",
"file_size": 911,
"href": "/configuration-files/IGVFFI3574SVFD/@@download/IGVFFI3574SVFD.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/11/6b4de511-df30-45aa-99b6-fb2b994c7aae/IGVFFI3574SVFD.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin6hrs-FF1-BinC-PCR4_Rep2_S186.yaml",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1389JGYH/",
"accession": "IGVFFI1389JGYH",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep2_S174"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:50:10.409837+00:00",
"file_format": "yaml",
"file_size": 912,
"href": "/configuration-files/IGVFFI1389JGYH/@@download/IGVFFI1389JGYH.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/11/0d210ac9-7889-4e4b-9960-cb6e3f64bdd7/IGVFFI1389JGYH.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin6hrs-FF1-BinC-PCR2_Rep2_S174.yaml",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5226BOFH/",
"accession": "IGVFFI5226BOFH",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep2_S180"
],
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:50:39.996257+00:00",
"file_format": "yaml",
"file_size": 913,
"href": "/configuration-files/IGVFFI5226BOFH/@@download/IGVFFI5226BOFH.yaml.gz",
"s3_uri": "s3://igvf-files/2024/06/11/3eba7070-6083-41f4-9661-31ba0ed3a5a9/IGVFFI5226BOFH.yaml.gz",
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin6hrs-FF1-BinC-PCR3_Rep2_S180.yaml",
"upload_status": "validated"
}
],
"input_file_set_for": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS6736VYAD/",
"accession": "IGVFDS6736VYAD",
"aliases": [
"jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep1_S113",
"jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep2_S168",
"jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep1_S119",
"jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep2_S174",
"jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep1_S125",
"jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep2_S180",
"jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep1_S131",
"jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep2_S186"
],
"preferred_assay_title": "CRISPR FlowFISH screen"
}
],
"release_timestamp": "2024-07-10T20:21:01.415432+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM3296OBHK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3296OBHK",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep1_S113",
"jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR1_Rep2_S168",
"jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep1_S119",
"jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR2_Rep2_S174",
"jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep1_S125",
"jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR3_Rep2_S180",
"jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep1_S131",
"jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin6hrs-FF1-BinC-PCR4_Rep2_S186"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS7857SYCK/"
],
"modifications": [
"/degron-modifications/95081d1b-08b4-49ed-b324-e53fc43d8456/",
"/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens",
"treatments": [
"/treatments/d35868d1-c45b-49ae-8ff3-a9c0c22551c2/"
]
}
],
"schema_version": "11",
"status": "released",
"submitted_by": {
"@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
"title": "Chongyon Park"
},
"submitted_files_timestamp": "2024-06-01T02:03:41.823464+00:00",
"summary": "gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci",
"uuid": "95dbb173-d627-43f3-a95d-f1d15dd0e4a1"
}