{
"@context": "/terms/",
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"AuxiliarySet",
"FileSet",
"Item"
],
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"aliases": [
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],
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS8347TPDV](/auxiliary-sets/IGVFDS8347TPDV/) has sequence file(s): [IGVFFI3245JMHQ](/sequence-files/IGVFFI3245JMHQ/), [IGVFFI7612SSEB](/sequence-files/IGVFFI7612SSEB/), [IGVFFI8153ZVNU](/sequence-files/IGVFFI8153ZVNU/), [IGVFFI6464LXPC](/sequence-files/IGVFFI6464LXPC/), [IGVFFI9484FOLM](/sequence-files/IGVFFI9484FOLM/), [IGVFFI0800YEAV](/sequence-files/IGVFFI0800YEAV/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
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"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS8347TPDV/"
}
]
},
"award": {
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"component": "functional characterization",
"contact_pi": {
"@id": "/users/eb543cda-67b7-493c-84eb-187d0dac13ba/",
"title": "Jay Shendure"
},
"title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
},
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"creation_timestamp": "2023-12-08T23:52:25.254375+00:00",
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{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Mus musculus"
}
],
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},
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},
{
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"creation_timestamp": "2023-12-09T00:55:10.393130+00:00",
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"sequencing_platform": "/platform-terms/EFO_0010963/",
"status": "released",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6464LXPC/",
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],
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"creation_timestamp": "2023-12-09T00:55:07.897458+00:00",
"file_format": "fastq",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9484FOLM/",
"accession": "IGVFFI9484FOLM",
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"creation_timestamp": "2023-12-09T00:55:09.189483+00:00",
"file_format": "fastq",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0800YEAV/",
"accession": "IGVFFI0800YEAV",
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],
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"controlled_access": false,
"creation_timestamp": "2023-12-09T00:55:11.704469+00:00",
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}
],
"input_for": [
"/analysis-sets/IGVFDS2622CKLA/"
],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS9654ACTQ/",
"accession": "IGVFDS9654ACTQ",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day16_reads"
],
"preferred_assay_title": "MPRA",
"status": "released"
}
],
"publications": [
{
"@id": "/publications/398edd7f-1ebb-40a0-a04b-450a2565667c/",
"publication_identifiers": [
"doi:10.1038/s41592-024-02260-3",
"PMID:38724692"
],
"status": "released"
}
],
"release_timestamp": "2024-06-27T00:41:12.630657+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM8231RSVA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8231RSVA",
"aliases": [
"jay-shendure:dev_CRE_mEBs_repA_bulk_day16"
],
"cell_fate_change_treatments": [
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],
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],
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],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"@type": [
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"Item"
],
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"summary": "mouse embryonic stem cell",
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}
],
"status": "released",
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"targeted_sample_term": {
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"status": "released",
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},
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}
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"submitted_by": {
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"title": "Beth Martin"
},
"submitted_files_timestamp": "2023-12-09T00:55:07.897458+00:00",
"summary": "quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci",
"uuid": "74337073-8c9c-4a65-8c83-086b9b21efa3"
}