Home

IGVFDS8280AMDA

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_sgRNA_LW277
Attribution
Gary Hon, UT

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R2
1
AAC7VLGHV
1
717 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC7VLGHV
2
677 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC7VLGHV
2
208 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC7VLGHV
2
184 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC7VLGHV
2
630 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC7VLGHV
1
199 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC7VLGHV
1
658 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC7VLGHV
1
220 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW277) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in many genomic loci

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_LW277
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_PrimaryAnalysis
Gary Hon, UT