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IGVFDS8280AMDA

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_sgRNA_LW277
Attribution
Gary Hon, UT

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R2
1
Read 2
AAC7VLGHV
1
717 MB
Gary Hon, UT
validated
fastq
reads
R2
1
Read 2
AAC7VLGHV
2
677 MB
Gary Hon, UT
validated
fastq
reads
I2
1
Barcode index
AAC7VLGHV
2
208 MB
Gary Hon, UT
validated
fastq
reads
I1
1
Barcode index
AAC7VLGHV
2
184 MB
Gary Hon, UT
validated
fastq
reads
R1
1
Read 1
AAC7VLGHV
2
630 MB
Gary Hon, UT
validated
fastq
reads
I1
1
Barcode index
AAC7VLGHV
1
199 MB
Gary Hon, UT
validated
fastq
reads
R1
1
Read 1
AAC7VLGHV
1
658 MB
Gary Hon, UT
validated
fastq
reads
I2
1
Barcode index
AAC7VLGHV
1
220 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW277) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in many genomic loci

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_LW277
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_PrimaryAnalysis
Gary Hon, UT