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IGVFDS8226YTNI

released
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf4_10x1
Attribution
Ansuman Satpathy, Stanford

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R1
1
223JJCLT3
5
849 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
223JJCLT3
3
551 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
223JJCLT3
5
223 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
223JJCLT3
3
1.4 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
223JJCLT3
3
384 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
223JJCLT3
3
3.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
223JJCLT3
5
1.9 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
223JJCLT3
5
297 MB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Related Measurement Sets

2 items
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf4_10x1
Ansuman Satpathy, Stanford
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf4_10x1
Ansuman Satpathy, Stanford

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf4_analysis_set
  • ansuman-satpathy:igvf4_analysis_set_10x1
Ansuman Satpathy, Stanford