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IGVFDS8214HXSU

released
File Set Type
cell sorting
Summary
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
Aliases
jesse-engreitz:auxiliary_sortparams_CRUDO_MYC-Auxin0hrs-FF2

Tabular Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
sample sort parameters
sample sort parameters
Jesse Engreitz, Stanford
483 B
validated

Samples

6 items
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin D for 55-65% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

Related Measurement Sets

6 items
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinB-PCR1_Rep1_S26
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinB-PCR1_Rep2_S81
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinB-PCR2_Rep1_S32
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinB-PCR2_Rep2_S87
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinB-PCR3_Rep1_S38
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinB-PCR3_Rep2_S93
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinB-PCR4_Rep1_S44
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinB-PCR4_Rep2_S99
Jesse Engreitz, Stanford
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR1_Rep1_S27
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR1_Rep2_S82
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR2_Rep1_S33
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR2_Rep2_S88
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR3_Rep1_S39
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR3_Rep2_S94
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR4_Rep1_S45
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR4_Rep2_S100
Jesse Engreitz, Stanford
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinA-PCR1_Rep1_S25
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinA-PCR1_Rep2_S80
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinA-PCR2_Rep1_S31
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinA-PCR2_Rep2_S86
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinA-PCR3_Rep1_S37
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinA-PCR3_Rep2_S92
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinA-PCR4_Rep1_S43
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinA-PCR4_Rep2_S98
Jesse Engreitz, Stanford
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinD-PCR1_Rep1_S28
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinD-PCR1_Rep2_S83
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinD-PCR2_Rep1_S34
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinD-PCR2_Rep2_S89
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinD-PCR3_Rep1_S40
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinD-PCR3_Rep2_S95
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinD-PCR4_Rep1_S46
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinD-PCR4_Rep2_S101
Jesse Engreitz, Stanford
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinE-PCR1_Rep1_S29
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinE-PCR1_Rep2_S84
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinE-PCR2_Rep1_S35
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinE-PCR2_Rep2_S90
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinE-PCR3_Rep1_S41
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinE-PCR3_Rep2_S96
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinE-PCR4_Rep1_S47
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinE-PCR4_Rep2_S102
Jesse Engreitz, Stanford
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR1_Rep1_S30
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR1_Rep2_S85
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR2_Rep1_S36
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR2_Rep2_S91
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR3_Rep1_S42
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR3_Rep2_S97
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR4_Rep1_S48
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF2-BinF-PCR4_Rep2_S103
Jesse Engreitz, Stanford

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford