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INDEXED
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AuxiliarySet
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IGVFDS8029DSPH
IGVFDS8029DSPH
released
Json view
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Aliases
charles-gersbach:cd8-tcells-perturb-seq-crispri-grna-rep1
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1875HEKG
fastq
reads
R2
1
IGVFFI0870CDUG
Illumina NovaSeq 6000
HMCCWDSX3
1
4.5 GB
Charles Gersbach, Duke
validated
IGVFFI3480BTJU
fastq
reads
R1
1
IGVFFI7954UIUN
Illumina NovaSeq 6000
HMCCWDSX3
2
2.5 GB
Charles Gersbach, Duke
validated
IGVFFI4222KPGA
fastq
reads
R1
1
IGVFFI2071NCQF
Illumina NovaSeq 6000
HMCCWDSX3
3
2.5 GB
Charles Gersbach, Duke
validated
IGVFFI5465GDKG
fastq
reads
R1
1
IGVFFI0870CDUG
Illumina NovaSeq 6000
HMCCWDSX3
1
2.5 GB
Charles Gersbach, Duke
validated
IGVFFI5492CFOS
fastq
reads
R2
1
IGVFFI7954UIUN
Illumina NovaSeq 6000
HMCCWDSX3
2
4.4 GB
Charles Gersbach, Duke
validated
IGVFFI5512GZXV
fastq
reads
R2
1
IGVFFI1298SMWW
Illumina NovaSeq 6000
HMCCWDSX3
4
4.4 GB
Charles Gersbach, Duke
validated
IGVFFI7250XPAW
fastq
reads
R2
1
IGVFFI2071NCQF
Illumina NovaSeq 6000
HMCCWDSX3
3
4.4 GB
Charles Gersbach, Duke
validated
IGVFFI9522NHQX
fastq
reads
R1
1
IGVFFI1298SMWW
Illumina NovaSeq 6000
HMCCWDSX3
4
2.5 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM3795JDHP
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS0821YMMV
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO7605NZFO
charles-gersbach:cd8-tcells-donor-6
unspecified
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS0821YMMV
guide (sgRNA) library targeting transcription start sites in 24 genes
IGVFFI1405WMSH
IGVFFI2489BLJI
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9813VHFD
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
charles-gersbach:cd8-tcells-perturb-seq-crispri-gex-rep1
Charles Gersbach, Duke
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9445RJOU
AnalysisSet
interference Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
charles-gersbach:cd8-tcells-analysis-set-perturb-seq-crispri
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke