Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
AuxiliarySet
/
IGVFDS7986GKWR
IGVFDS7986GKWR
preview
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_NPC_sgRNA_LW282
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2014MVWI
fastq
reads
R2
1
Illumina NextSeq 2000
AAC7VLGHV
1
596 MB
Gary Hon, UT
validated
IGVFFI2700GHXT
fastq
reads
I1
1
Illumina NextSeq 2000
AAC7VLGHV
2
167 MB
Gary Hon, UT
validated
IGVFFI3164PDJY
fastq
reads
R1
1
Illumina NextSeq 2000
AAC7VLGHV
2
548 MB
Gary Hon, UT
validated
IGVFFI3418CTXX
fastq
reads
R2
1
Illumina NextSeq 2000
AAC7VLGHV
2
558 MB
Gary Hon, UT
validated
IGVFFI3491WALI
fastq
reads
I2
1
Illumina NextSeq 2000
AAC7VLGHV
1
202 MB
Gary Hon, UT
validated
IGVFFI3852EJBS
fastq
reads
I1
1
Illumina NextSeq 2000
AAC7VLGHV
1
181 MB
Gary Hon, UT
validated
IGVFFI9141KKTA
fastq
reads
I2
1
Illumina NextSeq 2000
AAC7VLGHV
2
191 MB
Gary Hon, UT
validated
IGVFFI9536AHMJ
fastq
reads
R1
1
Illumina NextSeq 2000
AAC7VLGHV
1
577 MB
Gary Hon, UT
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM1288TQKF
InVitroSystem
GM25256 (WTC-11)
GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW282), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1756PPKO
igvf:donor_of_WTC11
male
Homo sapiens
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8810ABUD
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
gary-hon:TF_Perturb_Seq_Pilot_Lenti_NPC_LW282
Gary Hon, UT
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1588TVKF
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
gary-hon:WTC11_TF_Perturb_Seq_Pilot_NPC_Lenti_PrimaryAnalysis
Gary Hon, UT
Attribution
Award
HG011996
Principal Investigator(s)
Bruce Posner
,
Gary Hon
,
William Kraus
,
Nikhil Munshi
,
Maria Chahrour
Contact P.I.
Gary Hon
Lab
Gary Hon, UT