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INDEXED
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AuxiliarySet
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IGVFDS7563XAXA
IGVFDS7563XAXA
released
Json view
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf12_10x1
Sequencing Results (Illumina)
28 items
1
2
3
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0255VRZP
fastq
reads
R2
1
IGVFFI9421YMWK
Illumina NovaSeq X
225LWLLT3
6
638 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0469YGED
fastq
reads
R1
1
IGVFFI9421YMWK
Illumina NovaSeq X
225LWLLT3
6
285 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0580PJIJ
fastq
reads
R1
1
IGVFFI2618ZGAS
Illumina NovaSeq X
225LWLLT3
3
294 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1130XIUT
fastq
reads
I2
1
IGVFFI9421YMWK
Illumina NovaSeq X
225LWLLT3
6
80 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1709YCOP
fastq
reads
I1
1
IGVFFI2618ZGAS
Illumina NovaSeq X
225LWLLT3
3
114 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1818SDGY
fastq
reads
I1
1
IGVFFI6057HKMR
Illumina NovaSeq X
225LWLLT3
7
101 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1831MGLW
fastq
reads
I2
1
IGVFFI4864HCIP
Illumina NovaSeq X
225LWLLT3
1
82 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2254VJOX
fastq
reads
I2
1
IGVFFI2618ZGAS
Illumina NovaSeq X
225LWLLT3
3
83 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2333ISYB
fastq
reads
R1
1
IGVFFI2891IZHI
Illumina NovaSeq X
225LWLLT3
2
287 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2363LLKT
fastq
reads
I2
1
IGVFFI9273RDVJ
Illumina NovaSeq X
225LWLLT3
5
82 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM3641EGVH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Donors
3 items
Accession
Aliases
Sex
Taxa
IGVFDO0938OYMI
ansuman-satpathy:singh_bcell_donor_2
female
Homo sapiens
IGVFDO1264SGCS
ansuman-satpathy:bridge_bone_marrow_donor_2038
male
Homo sapiens
IGVFDO1718HCES
ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS1570UJMU
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf12_10x1
Ansuman Satpathy, Stanford
IGVFDS8103FALC
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf12_10x1
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0793KZKS
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
ansuman-satpathy:igvf12_analysis_set
ansuman-satpathy:igvf12_analysis_set_10x1
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford