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IGVFDS7537OHFN

released
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf6_10x3

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
I1
1
223JHMLT3
3
167 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
223JHMLT3
2
1.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
223JHMLT3
1
1.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
223JHMLT3
3
455 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
223JHMLT3
2
456 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
223JHMLT3
3
128 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
223JHMLT3
1
170 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
223JHMLT3
1
463 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
223JHMLT3
3
1.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
223JHMLT3
2
168 MB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_H1
male
Homo sapiens

Related Measurement Sets

2 items
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf6_10x3
Ansuman Satpathy, Stanford
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf6_10x3
Ansuman Satpathy, Stanford

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf6_analysis_set
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford