{
"@context": "/terms/",
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"AuxiliarySet",
"FileSet",
"Item"
],
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],
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{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
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"name": "audit_ntr_term_id",
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},
{
"category": "missing sequence specification",
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"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS7498VOOU/"
}
]
},
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"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
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{
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],
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}
],
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},
{
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],
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},
{
"@id": "/sequence-files/IGVFFI4437QXSH/",
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],
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"creation_timestamp": "2024-02-06T21:25:54.797806+00:00",
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"href": "/sequence-files/IGVFFI4437QXSH/@@download/IGVFFI4437QXSH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/02/06/e852bbc7-faaa-478f-993d-1693d3a5593c/IGVFFI4437QXSH.fastq.gz",
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"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6893DOBJ/",
"accession": "IGVFFI6893DOBJ",
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],
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"creation_timestamp": "2024-02-06T21:26:01.608766+00:00",
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"href": "/sequence-files/IGVFFI6893DOBJ/@@download/IGVFFI6893DOBJ.fastq.gz",
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"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS7943IIWZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS8841TWDX/",
"accession": "IGVFDS8841TWDX",
"aliases": [
"jesse-engreitz:measurement_set-scRNAseq_2kG_2PMDox2_5"
],
"preferred_assay_title": "Perturb-seq",
"status": "preview"
}
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM6643KIQQ/",
"@type": [
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"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6643KIQQ",
"aliases": [
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],
"classifications": [
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],
"construct_library_sets": [
"/construct-library-sets/IGVFDS1298TUYG/"
],
"modifications": [
{
"@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
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"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
"status": "released",
"summary": "TeloHAEC",
"term_name": "TeloHAEC"
}
],
"status": "preview",
"summary": "TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
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"submitted_by": {
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"title": "Ronghao Zhou"
},
"submitted_files_timestamp": "2024-02-06T21:25:38.607859+00:00",
"summary": "gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci",
"uuid": "5e956636-f39a-4095-8e3b-ccdc7b1963ee"
}