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AuxiliarySet
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IGVFDS7320EONJ
IGVFDS7320EONJ
released
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File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf6_10x2
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0311FPTX
fastq
reads
I1
1
IGVFFI2596KVCK
Illumina NovaSeq X
223JHMLT3
1
159 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2222XICV
fastq
reads
I2
1
IGVFFI7913SBBR
Illumina NovaSeq X
223JHMLT3
3
121 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2262XDDR
fastq
reads
I2
1
IGVFFI2596KVCK
Illumina NovaSeq X
223JHMLT3
1
123 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2582FWAA
fastq
reads
R1
1
IGVFFI7913SBBR
Illumina NovaSeq X
223JHMLT3
3
432 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2900DSNE
fastq
reads
I1
1
IGVFFI3931ZJRD
Illumina NovaSeq X
223JHMLT3
2
157 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2988RNHF
fastq
reads
R1
1
IGVFFI2596KVCK
Illumina NovaSeq X
223JHMLT3
1
438 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4802ZDMW
fastq
reads
I1
1
IGVFFI7913SBBR
Illumina NovaSeq X
223JHMLT3
3
156 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6073CHBH
fastq
reads
R2
1
IGVFFI7913SBBR
Illumina NovaSeq X
223JHMLT3
3
973 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6197ETTT
fastq
reads
I2
1
IGVFFI3931ZJRD
Illumina NovaSeq X
223JHMLT3
2
121 MB
Ansuman Satpathy, Stanford
validated
IGVFFI7915INAJ
fastq
reads
R2
1
IGVFFI2596KVCK
Illumina NovaSeq X
223JHMLT3
1
987 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM8961ZZQN
MultiplexedSample
H1-hESC
multiplexed sample: Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days; Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days; ... and 6 more samples
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO6638HIAD
igvf:donor_of_H1
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS4095FWRD
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf6_10x2
Ansuman Satpathy, Stanford
IGVFDS6310VXMX
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf6_10x2
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4816GMHG
AnalysisSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:igvf6_analysis_set_10x2
Ansuman Satpathy, Stanford