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IGVFDS7244MIKM

released
File Set Type
circularized RNA barcode detection
Summary
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Aliases
jay-shendure:dev_CRE_mEBs_oBC_rep2B_10Xlane2_reads
Publications
Attribution
Jay Shendure, UW

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
I1
1
H3JVCBGXM
2
347 MB
Jay Shendure, UW
validated
fastq
reads
R1
1
H3JVCBGXM
2
1.1 GB
Jay Shendure, UW
validated
fastq
reads
R2
1
H3JVCBGXM
2
1.5 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • jay-shendure:WD44_donor
male
Mus musculus

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting accessible genome regions in many genomic loci

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
  • jay-shendure:dev_CRE_mEBs_GEx_rep2B_10Xlane2_reads
Jay Shendure, UW

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
MPRA (scQer): element quantifications
  • jay-shendure:analysis_set_scQers_mEBs
Jay Shendure, UW