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INDEXED
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AuxiliarySet
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IGVFDS7173XOSJ
IGVFDS7173XOSJ
released
GRU
PUB
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File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf13_10x4
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0480RGVM
fastq
reads
R2
1
IGVFFI8958HVLI
Illumina NovaSeq X
22HHHWLT3
2
337 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2296XYBJ
fastq
reads
I2
1
IGVFFI7827CQSS
Illumina NovaSeq X
22HHHWLT3
1
48 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2794PXGI
fastq
reads
R1
1
IGVFFI0054BSGA
Illumina NovaSeq X
22HHHWLT3
3
141 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3019AOXD
fastq
reads
I1
1
IGVFFI8958HVLI
Illumina NovaSeq X
22HHHWLT3
2
63 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3561RNRT
fastq
reads
R2
1
IGVFFI0054BSGA
Illumina NovaSeq X
22HHHWLT3
3
317 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3810ZQMP
fastq
reads
R1
1
IGVFFI8958HVLI
Illumina NovaSeq X
22HHHWLT3
2
149 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4243GKAV
fastq
reads
I1
1
IGVFFI0054BSGA
Illumina NovaSeq X
22HHHWLT3
3
59 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4989HLMM
fastq
reads
I2
1
IGVFFI8958HVLI
Illumina NovaSeq X
22HHHWLT3
2
51 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5372RBGY
fastq
reads
I1
1
IGVFFI7827CQSS
Illumina NovaSeq X
22HHHWLT3
1
58 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6533IOEO
fastq
reads
R2
1
IGVFFI7827CQSS
Illumina NovaSeq X
22HHHWLT3
1
308 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4220ALCU
MultiplexedSample
left coronary artery
coronary artery disorder
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples
Donors
4 items
Accession
Aliases
Sex
Taxa
IGVFDO1255NCVH
thomas-quertermous:LAD_multiome_donor2
female
Homo sapiens
IGVFDO2120EMSK
thomas-quertermous:LAD_multiome_donor1
male
Homo sapiens
IGVFDO4204VAPA
thomas-quertermous:LAD_multiome_donor3
female
Homo sapiens
IGVFDO4556QZMA
thomas-quertermous:LAD_multiome_donor4
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS2114XGWE
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf13_10x4
Ansuman Satpathy, Stanford
IGVFDS5059CAEA
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf13_10x4
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4694DHAU
AnalysisSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:igvf13_analysis_set_10x4
Ansuman Satpathy, Stanford