{
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],
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],
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{
"category": "NTR term ID",
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{
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],
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{
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],
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},
{
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],
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},
{
"@id": "/human-donors/IGVFDO9018OPIO/",
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],
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},
{
"@id": "/human-donors/IGVFDO3459DFTW/",
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],
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},
{
"@id": "/human-donors/IGVFDO7503RZHO/",
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"igvf:donor_of_MCF7"
],
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}
],
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},
{
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],
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"creation_timestamp": "2025-01-28T04:16:01.465074+00:00",
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},
{
"@id": "/sequence-files/IGVFFI1882TZQH/",
"accession": "IGVFFI1882TZQH",
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],
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"creation_timestamp": "2025-01-28T04:16:06.873843+00:00",
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"file_size": 87834829,
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},
{
"@id": "/configuration-files/IGVFFI4793QLKE/",
"accession": "IGVFFI4793QLKE",
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],
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"creation_timestamp": "2025-02-26T01:45:18.436961+00:00",
"file_format": "yaml",
"file_size": 1338,
"href": "/configuration-files/IGVFFI4793QLKE/@@download/IGVFFI4793QLKE.yaml.gz",
"s3_uri": "s3://igvf-files/2025/02/26/b02be7a7-0c81-4a64-beb5-a485e498df03/IGVFFI4793QLKE.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_multi_10x1_NGS1_multi_seqspec.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4963SRAJ/"
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
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{
"@id": "/measurement-sets/IGVFDS1210CYWP/",
"accession": "IGVFDS1210CYWP",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf18_10x1"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS1427CODJ/",
"accession": "IGVFDS1427CODJ",
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"ansuman-satpathy:snATAC-seq_igvf18_10x1"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
}
],
"release_timestamp": "2025-03-07T01:17:57.966698+00:00",
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{
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"@type": [
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"Sample",
"Item"
],
"accession": "IGVFSM4392KEFB",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf18_10x1"
],
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"classifications": [
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"multiplexed sample"
],
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"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
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"term_name": "IMR-90"
},
{
"@id": "/sample-terms/EFO_0001203/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
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"term_name": "MCF-7"
},
{
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"SampleTerm",
"OntologyTerm",
"Item"
],
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],
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"term_name": "HCT116"
},
{
"@id": "/sample-terms/EFO_0003072/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:SK-N-SH"
],
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},
{
"@id": "/sample-terms/EFO_0022838/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HUDEP-2"
],
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"summary": "HUDEP-2",
"term_name": "HUDEP-2"
},
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
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"summary": "TeloHAEC",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
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"status": "in progress",
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"treatment_type": "chemical"
}
]
}
],
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"submitted_by": {
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"title": "Christopher Mcginnis"
},
"submitted_files_timestamp": "2025-01-28T04:16:01.465074+00:00",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)",
"uuid": "ab0e4d05-d927-44c4-8b29-fe9e6cb2a6a9"
}