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INDEXED
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AuxiliarySet
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IGVFDS7143XIKJ
IGVFDS7143XIKJ
released
Json view
File Set Type
quantification DNA barcode sequencing
Summary
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Publications
Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel Reporter Assays
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0852UCYT
fastq
reads
R3
1
IGVFFI0358RHDO
Illumina NextSeq 500
397 MB
Nadav Ahituv, UCSF
validated
IGVFFI5528FTRW
fastq
reads
R2
1
IGVFFI0358RHDO
Illumina NextSeq 500
345 MB
Nadav Ahituv, UCSF
validated
IGVFFI8327DUVA
fastq
reads
R1
1
IGVFFI0358RHDO
Illumina NextSeq 500
397 MB
Nadav Ahituv, UCSF
validated
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1673EWYY
MeasurementSet
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Nadav Ahituv, UCSF
File Sets Using This Auxiliary Set as an Input
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS2165KBMD
AnalysisSet
lentiMPRA: reporter experiment
Nadav Ahituv, UCSF
IGVFDS5394QLIN
AnalysisSet
lentiMPRA: reporter genomic variant effects
Nadav Ahituv, UCSF
Attribution
Award
HG011966
Principal Investigator(s)
Jay Shendure
,
Nadav Ahituv
,
Martin Kircher
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF