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AuxiliarySet
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IGVFDS6861GRJI
IGVFDS6861GRJI
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_sgRNA_LW280
Attribution
Gary Hon, UT
(
HG011996
—
Gary Hon
)
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0148GGAF
fastq
reads
R1
1
Illumina NextSeq 2000
AAC7VLGHV
2
541 MB
Gary Hon, UT
validated
IGVFFI2706WHPV
fastq
reads
I1
1
Illumina NextSeq 2000
AAC7VLGHV
1
193 MB
Gary Hon, UT
validated
IGVFFI4378HMYC
fastq
reads
R2
1
Illumina NextSeq 2000
AAC7VLGHV
2
577 MB
Gary Hon, UT
validated
IGVFFI5059JEYE
fastq
reads
I2
1
Illumina NextSeq 2000
AAC7VLGHV
2
189 MB
Gary Hon, UT
validated
IGVFFI5920ILPO
fastq
reads
I1
1
Illumina NextSeq 2000
AAC7VLGHV
2
173 MB
Gary Hon, UT
validated
IGVFFI7335PJUM
fastq
reads
R2
1
Illumina NextSeq 2000
AAC7VLGHV
1
621 MB
Gary Hon, UT
validated
IGVFFI7902JDLP
fastq
reads
R1
1
Illumina NextSeq 2000
AAC7VLGHV
1
575 MB
Gary Hon, UT
validated
IGVFFI9772UXBJ
fastq
reads
I2
1
Illumina NextSeq 2000
AAC7VLGHV
1
205 MB
Gary Hon, UT
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM0604KDJF
InVitroSystem
GM25256 (WTC-11)
IGVFDS2302LCEO
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW280) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1756PPKO
igvf:donor_of_WTC11
male
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS2302LCEO
guide (sgRNA) library targeting accessible genome regions in many genomic loci
IGVFFI7568FEHI
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4852MAUM
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_LW280
Gary Hon, UT
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4389OUWU
AnalysisSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_PrimaryAnalysis
Gary Hon, UT