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IGVFDS6861GRJI

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File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_sgRNA_LW280
Attribution
Gary Hon, UT

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R1
1
Read 1
AAC7VLGHV
2
541 MB
Gary Hon, UT
validated
fastq
reads
I1
1
Barcode index
AAC7VLGHV
1
193 MB
Gary Hon, UT
validated
fastq
reads
R2
1
Read 2
AAC7VLGHV
2
577 MB
Gary Hon, UT
validated
fastq
reads
I2
1
Barcode index
AAC7VLGHV
2
189 MB
Gary Hon, UT
validated
fastq
reads
I1
1
Barcode index
AAC7VLGHV
2
173 MB
Gary Hon, UT
validated
fastq
reads
R2
1
Read 2
AAC7VLGHV
1
621 MB
Gary Hon, UT
validated
fastq
reads
R1
1
Read 1
AAC7VLGHV
1
575 MB
Gary Hon, UT
validated
fastq
reads
I2
1
Barcode index
AAC7VLGHV
1
205 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW280) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in many genomic loci

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_LW280
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_PrimaryAnalysis
Gary Hon, UT