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IGVFDS6780UKAY

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File Set Type
cell hashing barcode sequencing
Summary
cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:differentited_H9_CM_Pilot2_Mini_Inducible_HTO_LW421
Attribution
Gary Hon, UT

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
I1
1
227C7WLT4
6
467 MB
Gary Hon, UT
validated
fastq
reads
R1
1
227C7WLT4
6
4.9 GB
Gary Hon, UT
validated
fastq
reads
R2
1
227C7WLT4
6
5.2 GB
Gary Hon, UT
validated
fastq
reads
I2
1
227C7WLT4
6
570 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW421) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_H9
female
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in many genomic loci

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:differentited_H9_CM_Pilot2_Mini_Inducible_LW421
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
  • gary-hon:H9_CM_Pilot2_Mini_Inducible_PrimaryAnalysis
Gary Hon, UT