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IGVFDS6402AFPQ

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
cell hashing barcode sequencing
Summary
cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:CM_Pilot_2_PB_HTO_LW238

Sequencing Results (Illumina)

8 items
fastq
reads
I2
1
AAC235NHV
2
109 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC235NHV
2
113 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC235NHV
1
124 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC235NHV
2
634 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC235NHV
2
341 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC235NHV
1
119 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC235NHV
1
372 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC235NHV
1
695 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW268), male, Homo sapiens modified with CRISPRi Sp-dCas9, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:CM_Pilot_2_PB_RNA_LW238
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
  • gary-hon:CM_Pilot_2_PB_RNA
Gary Hon, UT

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT