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IGVFDS6346MBBC

released
File Set Type
gRNA sequencing
Summary
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR1_Rep1_S136
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR1_Rep2_S191
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR2_Rep1_S142
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR2_Rep2_S197
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR3_Rep1_S148
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR3_Rep2_S203
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR4_Rep1_S154
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR4_Rep2_S209

Sequencing Results

8 items
fastq
reads
1
AGGATCTA:GCCA
26 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
CCTTCGCA:GCCA
20 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
CCTTCGCA:TTGA
22 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
CAGCAAGG:TTGA
15 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
ATTCTAGG:TTGA
25 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
AGGATCTA:TTGA
30 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
ATTCTAGG:GCCA
21 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
CAGCAAGG:GCCA
20 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR1_Rep1_S136
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR1_Rep2_S191
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR2_Rep1_S142
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR2_Rep2_S197
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR3_Rep1_S148
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR3_Rep2_S203
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR4_Rep1_S154
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR4_Rep2_S209
Jesse Engreitz, Stanford

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford