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IGVFDS6238DNAR

released
File Set Type
gRNA sequencing
Summary
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR1_S4
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR2_S10
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR3_S100
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR4_S106

Sequencing Results

4 items
fastq
reads
1
TGCTCGAC:ATTG
29 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
TGCTCGAC:CTCT
9.8 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
GGTCCAGA:ATTG
28 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
GGTCCAGA:CTCT
12 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin D for 55-65% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR1_S4
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR2_S10
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR3_S100
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF1-BinD-PCR4_S106
Jesse Engreitz, Stanford

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford