{
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],
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{
"category": "NTR term ID",
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],
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{
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],
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},
{
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],
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},
{
"@id": "/human-donors/IGVFDO4200NZSV/",
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],
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},
{
"@id": "/human-donors/IGVFDO3459DFTW/",
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],
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},
{
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"igvf:donor_of_SKNSH"
],
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}
],
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},
{
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],
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},
{
"@id": "/sequence-files/IGVFFI7176VMFZ/",
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],
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"creation_timestamp": "2025-01-28T04:17:10.868282+00:00",
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},
{
"@id": "/configuration-files/IGVFFI2796VZZW/",
"accession": "IGVFFI2796VZZW",
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],
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"creation_timestamp": "2025-02-26T01:45:32.103837+00:00",
"file_format": "yaml",
"file_size": 1337,
"href": "/configuration-files/IGVFFI2796VZZW/@@download/IGVFFI2796VZZW.yaml.gz",
"s3_uri": "s3://igvf-files/2025/02/26/305b85ef-846b-41e9-aade-8396cb02a7d9/IGVFFI2796VZZW.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_multi_10x4_NGS1_multi_seqspec.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4963SRAJ/"
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
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{
"@id": "/measurement-sets/IGVFDS4170WANT/",
"accession": "IGVFDS4170WANT",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf18_10x4"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS9305YTYU/",
"accession": "IGVFDS9305YTYU",
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"ansuman-satpathy:snATAC-seq_igvf18_10x4"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
}
],
"release_timestamp": "2025-03-07T01:18:09.082930+00:00",
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{
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"@type": [
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"Sample",
"Item"
],
"accession": "IGVFSM3125MLLP",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf18_10x4"
],
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"classifications": [
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"multiplexed sample"
],
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"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
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"term_name": "IMR-90"
},
{
"@id": "/sample-terms/EFO_0001203/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "MCF-7",
"term_name": "MCF-7"
},
{
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"@type": [
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"OntologyTerm",
"Item"
],
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],
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"term_name": "HCT116"
},
{
"@id": "/sample-terms/EFO_0003072/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:SK-N-SH"
],
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"term_name": "SK-N-SH"
},
{
"@id": "/sample-terms/EFO_0022838/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HUDEP-2"
],
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"summary": "HUDEP-2",
"term_name": "HUDEP-2"
},
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
"status": "released",
"summary": "TeloHAEC",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
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"purpose": "perturbation",
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"treatment_type": "chemical"
}
]
}
],
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"status": "released",
"submitted_by": {
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"title": "Christopher Mcginnis"
},
"submitted_files_timestamp": "2025-01-28T04:17:10.868282+00:00",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)",
"uuid": "02a94937-5970-4d03-92cf-cea940690569"
}