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IGVFDS5986XHYV

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File Set Type
cell hashing barcode sequencing
Summary
cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:CM_Pilot_2_PB_HTO_LW231
Attribution
Gary Hon, UT

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
I1
1
AAC235NHV
1
137 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC235NHV
1
133 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC235NHV
1
752 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC235NHV
2
118 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC235NHV
2
372 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC235NHV
2
685 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC235NHV
2
129 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC235NHV
1
408 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW261) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in many genomic loci

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:CM_Pilot_2_PB_RNA_LW231
Gary Hon, UT

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
  • gary-hon:CM_Pilot_2_PB_RNA
Gary Hon, UT