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INDEXED
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AuxiliarySet
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IGVFDS5974ACGH
IGVFDS5974ACGH
released
Json view
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf12_10x4
Sequencing Results (Illumina)
28 items
1
2
3
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0887DXHX
fastq
reads
I1
1
IGVFFI3405UPJT
Illumina NovaSeq X
225LWLLT3
3
101 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1160TMAD
fastq
reads
I2
1
IGVFFI7978MFRS
Illumina NovaSeq X
225LWLLT3
5
70 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1328EOAG
fastq
reads
R1
1
IGVFFI7708TOHY
Illumina NovaSeq X
225LWLLT3
7
230 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1491CYBN
fastq
reads
R1
1
IGVFFI3545NFDF
Illumina NovaSeq X
225LWLLT3
1
253 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1531KFZB
fastq
reads
I1
1
IGVFFI2075HIIM
Illumina NovaSeq X
225LWLLT3
6
98 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1727HWTY
fastq
reads
I2
1
IGVFFI1414ECHV
Illumina NovaSeq X
225LWLLT3
4
70 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1763XQIX
fastq
reads
R2
1
IGVFFI8963OLBE
Illumina NovaSeq X
225LWLLT3
2
566 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1766FBBG
fastq
reads
R1
1
IGVFFI1414ECHV
Illumina NovaSeq X
225LWLLT3
4
251 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2341XLAZ
fastq
reads
I1
1
IGVFFI1414ECHV
Illumina NovaSeq X
225LWLLT3
4
99 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2669PXSL
fastq
reads
I2
1
IGVFFI8963OLBE
Illumina NovaSeq X
225LWLLT3
2
69 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM3762JDVU
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Donors
3 items
Accession
Aliases
Sex
Taxa
IGVFDO0938OYMI
ansuman-satpathy:singh_bcell_donor_2
female
Homo sapiens
IGVFDO1264SGCS
ansuman-satpathy:bridge_bone_marrow_donor_2038
male
Homo sapiens
IGVFDO1718HCES
ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS2361VFLK
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf12_10x4
Ansuman Satpathy, Stanford
IGVFDS5103JQSX
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf12_10x4
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4731QGJR
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
ansuman-satpathy:igvf12_analysis_set_10x4
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford