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AuxiliarySet
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IGVFDS5798HAUC
IGVFDS5798HAUC
released
Json view
File Set Type
quantification DNA barcode sequencing
Summary
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
Description
HEK293T DNA count data of replicate 2
Submitter Comment
rep2
Attribution
Nadav Ahituv, UCSF
(
HG011966
—
Jay Shendure
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0745BZJW
fastq
reads
R1
3
Barcode forward
IGVFFI5045HRAK
Illumina NextSeq 500
875 MB
Nadav Ahituv, UCSF
validated
IGVFFI3315BUYG
fastq
reads
R2
3
UMI
IGVFFI5045HRAK
Illumina NextSeq 500
936 MB
Nadav Ahituv, UCSF
validated
IGVFFI3494FIPR
fastq
reads
R1
5
Barcode forward
IGVFFI5045HRAK
Illumina NextSeq 500
21 MB
Nadav Ahituv, UCSF
validated
IGVFFI3917RLFW
fastq
reads
R3
5
Barcode reverse
IGVFFI5045HRAK
Illumina NextSeq 500
21 MB
Nadav Ahituv, UCSF
validated
IGVFFI4744IBKS
fastq
reads
R3
4
Barcode reverse
IGVFFI5045HRAK
Illumina NextSeq 500
48 MB
Nadav Ahituv, UCSF
validated
IGVFFI6204YNLN
fastq
reads
R1
6
Barcode forward
IGVFFI5045HRAK
Illumina NextSeq 500
541 MB
Nadav Ahituv, UCSF
validated
IGVFFI6913ZHZQ
fastq
reads
R3
6
Barcode reverse
IGVFFI5045HRAK
Illumina NextSeq 500
537 MB
Nadav Ahituv, UCSF
validated
IGVFFI7646DGAU
fastq
reads
R2
6
UMI
IGVFFI5045HRAK
Illumina NextSeq 500
565 MB
Nadav Ahituv, UCSF
validated
IGVFFI7895RSMK
fastq
reads
R2
5
UMI
IGVFFI5045HRAK
Illumina NextSeq 500
22 MB
Nadav Ahituv, UCSF
validated
IGVFFI8699ZPZT
fastq
reads
R3
3
Barcode reverse
IGVFFI5045HRAK
Illumina NextSeq 500
881 MB
Nadav Ahituv, UCSF
validated
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3908QZCZ
MeasurementSet
lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
Nadav Ahituv, UCSF
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2308SBSR
AnalysisSet
lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide
Nadav Ahituv, UCSF