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IGVFDS5763YUNI

released
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf17_10x4
Barcode Map
IGVFFI8290RCZJ

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I2
1
22NCYLLT3
8
53 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NCYLLT3
8
73 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
22NCYLLT3
7
177 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NCYLLT3
7
72 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22NCYLLT3
6
73 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
22NCYLLT3
5
178 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
22NCYLLT3
5
53 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
22NCYLLT3
7
53 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
22NCYLLT3
8
178 MB
Ansuman Satpathy, Stanford
validated
fastq
reads
I2
1
22NCYLLT3
6
54 MB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_RUES2
  • igvf:donor_RUES2
female
Homo sapiens

Related Measurement Sets

2 items
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf17_10x4
Ansuman Satpathy, Stanford
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf17_10x4
Ansuman Satpathy, Stanford

File Sets Using This Auxiliary Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf17_analysis_set
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford