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IGVFDS5533XJRU

released
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
Aliases
jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin6hrs-Rep1
Attribution
Jesse Engreitz, Stanford

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
I1
1
2
72 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
2
405 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
3
415 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
2
220 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
1
74 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
3
232 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
4
414 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
4
229 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
1
413 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
4
74 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) HCT116 cell line treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in 29 genomic loci

Related Measurement Sets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
  • jesse-engreitz:measurement_CRUDO_TAPseq-Auxin6hrs-Rep1
Jesse Engreitz, Stanford