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INDEXED
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AuxiliarySet
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IGVFDS5533XJRU
IGVFDS5533XJRU
released
Json view
File Set Type
gRNA sequencing
Summary
gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
Aliases
jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin6hrs-Rep1
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0675WIPQ
fastq
reads
I1
1
IGVFFI8106AJBG
Illumina NextSeq 550
2
72 MB
Jesse Engreitz, Stanford
validated
IGVFFI1192NXTI
fastq
reads
R2
1
IGVFFI8106AJBG
Illumina NextSeq 550
2
405 MB
Jesse Engreitz, Stanford
validated
IGVFFI1421DDQV
fastq
reads
R2
1
IGVFFI9289WLAJ
Illumina NextSeq 550
3
415 MB
Jesse Engreitz, Stanford
validated
IGVFFI2914SEZO
fastq
reads
R1
1
IGVFFI8106AJBG
Illumina NextSeq 550
2
220 MB
Jesse Engreitz, Stanford
validated
IGVFFI2954POWQ
fastq
reads
I1
1
IGVFFI4295FGJK
Illumina NextSeq 550
1
74 MB
Jesse Engreitz, Stanford
validated
IGVFFI4105QVFH
fastq
reads
R1
1
IGVFFI9289WLAJ
Illumina NextSeq 550
3
232 MB
Jesse Engreitz, Stanford
validated
IGVFFI4762FVTH
fastq
reads
R2
1
IGVFFI2187YPQG
Illumina NextSeq 550
4
414 MB
Jesse Engreitz, Stanford
validated
IGVFFI5484ZXJH
fastq
reads
R1
1
IGVFFI2187YPQG
Illumina NextSeq 550
4
229 MB
Jesse Engreitz, Stanford
validated
IGVFFI7012CCWR
fastq
reads
R2
1
IGVFFI4295FGJK
Illumina NextSeq 550
1
413 MB
Jesse Engreitz, Stanford
validated
IGVFFI7147GVXA
fastq
reads
I1
1
IGVFFI2187YPQG
Illumina NextSeq 550
4
74 MB
Jesse Engreitz, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM9983LVUX
InVitroSystem
HCT116
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO0384OZRW
igvf:donor_of_HCT116
male
Homo sapiens
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6896VSKX
MeasurementSet
mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
jesse-engreitz:measurement_CRUDO_TAPseq-Auxin6hrs-Rep1
Jesse Engreitz, Stanford
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford