Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
AuxiliarySet
/
IGVFDS5339UNRP
IGVFDS5339UNRP
preview
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_NPC_sgRNA_LW284
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1428MDRF
fastq
reads
I2
1
Illumina NextSeq 2000
AAC7VLGHV
2
184 MB
Gary Hon, UT
validated
IGVFFI2235WFJR
fastq
reads
I2
1
Illumina NextSeq 2000
AAC7VLGHV
1
197 MB
Gary Hon, UT
validated
IGVFFI3240FCBJ
fastq
reads
R1
1
Illumina NextSeq 2000
AAC7VLGHV
1
512 MB
Gary Hon, UT
validated
IGVFFI5213ZPGN
fastq
reads
R2
1
Illumina NextSeq 2000
AAC7VLGHV
1
531 MB
Gary Hon, UT
validated
IGVFFI7051FHND
fastq
reads
R2
1
Illumina NextSeq 2000
AAC7VLGHV
2
496 MB
Gary Hon, UT
validated
IGVFFI8462WRNK
fastq
reads
I1
1
Illumina NextSeq 2000
AAC7VLGHV
2
162 MB
Gary Hon, UT
validated
IGVFFI8576TNCS
fastq
reads
R1
1
Illumina NextSeq 2000
AAC7VLGHV
2
485 MB
Gary Hon, UT
validated
IGVFFI9815IGUY
fastq
reads
I1
1
Illumina NextSeq 2000
AAC7VLGHV
1
174 MB
Gary Hon, UT
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM2597WGYB
InVitroSystem
GM25256 (WTC-11)
GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW284), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1756PPKO
igvf:donor_of_WTC11
male
Homo sapiens
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0657YBVN
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
gary-hon:TF_Perturb_Seq_Pilot_Lenti_NPC_LW284
Gary Hon, UT
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1588TVKF
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
gary-hon:WTC11_TF_Perturb_Seq_Pilot_NPC_Lenti_PrimaryAnalysis
Gary Hon, UT
Attribution
Award
HG011996
Principal Investigator(s)
Bruce Posner
,
Gary Hon
,
William Kraus
,
Nikhil Munshi
,
Maria Chahrour
Contact P.I.
Gary Hon
Lab
Gary Hon, UT