{
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],
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],
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}
],
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{
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"s3_uri": "s3://igvf-files/2024/07/19/87e87eed-06e5-4053-bbca-8461d0fcbe3b/IGVFFI6088QALC.fastq.gz",
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},
{
"@id": "/configuration-files/IGVFFI6462KGWB/",
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"file_format": "yaml",
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"s3_uri": "s3://igvf-files/2024/09/18/4dc4a2ab-fba4-4de6-a177-2c1816168dd7/IGVFFI6462KGWB.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp0_multi_10x1_NGS1_multi_seqspec.yaml.gz",
"upload_status": "validated"
}
],
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"/analysis-sets/IGVFDS5448FWBW/"
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS6243XJYN/",
"accession": "IGVFDS6243XJYN",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf0_10x1"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS7482RDGX/",
"accession": "IGVFDS7482RDGX",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf0_10x1"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
}
],
"notes": "File_set_type enum oligo-conjugated lipids has been renamed to be lipid-conjugated oligo sequencing.",
"release_timestamp": "2025-03-07T01:10:20.645037+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM2682GVVD/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2682GVVD",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf0_10x1"
],
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
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"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"@type": [
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"OntologyTerm",
"Item"
],
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],
"status": "released",
"summary": "GM25256 (WTC-11)",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
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"status": "released",
"submitted_by": {
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"title": "Christopher Mcginnis"
},
"submitted_files_timestamp": "2024-07-19T22:42:28.125599+00:00",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)",
"uuid": "e13689b3-4ac1-4d32-a7e4-f48d5268fb06"
}