{
"@context": "/terms/",
"@id": "/auxiliary-sets/IGVFDS4701YCEL/",
"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
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"aliases": [
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR1_Rep1_S2",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR1_Rep2_S57",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR2_Rep1_S8",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR2_Rep2_S63",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR3_Rep1_S14",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR3_Rep2_S69",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR4_Rep1_S20",
"jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR4_Rep2_S75"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Auxiliary set [IGVFDS4701YCEL](/auxiliary-sets/IGVFDS4701YCEL/) has sequence file(s) [IGVFFI6952RHQM](/sequence-files/IGVFFI6952RHQM/), [IGVFFI1122HKWU](/sequence-files/IGVFFI1122HKWU/), [IGVFFI1697DZHB](/sequence-files/IGVFFI1697DZHB/), [IGVFFI8224NGZQ](/sequence-files/IGVFFI8224NGZQ/), [IGVFFI7565VCLO](/sequence-files/IGVFFI7565VCLO/), [IGVFFI3742WWYT](/sequence-files/IGVFFI3742WWYT/), [IGVFFI7880EKFD](/sequence-files/IGVFFI7880EKFD/), [IGVFFI1267BFAZ](/sequence-files/IGVFFI1267BFAZ/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/auxiliary-sets/IGVFDS4701YCEL/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
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"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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"aliases": [
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],
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"status": "released",
"taxa": "Homo sapiens"
}
],
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{
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],
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"upload_status": "validated"
},
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],
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"upload_status": "validated"
},
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],
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},
{
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],
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"upload_status": "validated"
},
{
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],
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"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7757NDSP/",
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],
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"upload_status": "validated"
},
{
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],
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"upload_status": "validated"
},
{
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],
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},
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},
{
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},
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},
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},
{
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},
{
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},
{
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},
{
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}
],
"input_for": [
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],
"lab": {
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"title": "Jesse Engreitz, Stanford"
},
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{
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"aliases": [
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"jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR3_Rep1_S14",
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],
"preferred_assay_title": "CRISPR FlowFISH screen",
"status": "released"
}
],
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"samples": [
{
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"Biosample",
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"Item"
],
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"jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin0hrs-FF1-BinB-PCR4_Rep1_S20",
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],
"classifications": [
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],
"construct_library_sets": [
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],
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{
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},
{
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}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "12",
"status": "released",
"submitted_by": {
"@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
"title": "Chongyon Park"
},
"submitted_files_timestamp": "2024-06-01T01:58:04.312138+00:00",
"summary": "gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci",
"uuid": "156deefa-faaf-4730-8478-43866c648284"
}