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INDEXED
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AuxiliarySet
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IGVFDS4549GERY
IGVFDS4549GERY
released
Json view
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
Aliases
jesse-engreitz:auxiliary_NOS3_CRISPRi_FF_R1_FFrep2_binC_PCR2_S203
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3108NCGS
fastq
reads
I1
1
Illumina MiSeq
9.9 MB
Jesse Engreitz, Stanford
validated
IGVFFI7293HSCQ
fastq
reads
I2
1
Illumina MiSeq
9.7 MB
Jesse Engreitz, Stanford
validated
IGVFFI9338PAKH
fastq
reads
R1
1
Illumina MiSeq
28 MB
Jesse Engreitz, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM4987QNQG
InVitroSystem
TeloHAEC
TeloHAEC cell line, female, Homo sapiens (sorting details: FACS bin C for 51-75% expression of NOS3) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO3459DFTW
igvf:donor_of_teloHAEC
female
Homo sapiens
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3743BFON
MeasurementSet
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
jesse-engreitz:measurement_NOS3_CRISPRi_FF_R1_FFrep2_binC_PCR2_S203
Jesse Engreitz, Stanford
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jesse Engreitz, Stanford