IGVFDS4432QTTQ

{
    "@context": "/terms/",
    "@id": "/auxiliary-sets/IGVFDS4432QTTQ/",
    "@type": [
        "AuxiliarySet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS4432QTTQ",
    "aliases": [
        "jesse-engreitz:auxiliary_NOS3_CRISPRi_FF_R2_FFrep2_binB_PCR2_S218"
    ],
    "audit": {
        "ERROR": [
            {
                "category": "missing measurement set",
                "detail": "Auxiliary set [IGVFDS4432QTTQ](/auxiliary-sets/IGVFDS4432QTTQ/) is not associated with any `measurement_sets`. Auxiliary sets are expected to be associated with a measurement set(s).",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_missing_measurement_sets",
                "path": "/auxiliary-sets/IGVFDS4432QTTQ/"
            }
        ],
        "INTERNAL_ACTION": [
            {
                "category": "NTR term ID",
                "detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_ntr_term_id",
                "path": "/sample-terms/NTR_0000753/"
            }
        ],
        "NOT_COMPLIANT": [
            {
                "category": "missing files",
                "detail": "Auxiliary set [IGVFDS4432QTTQ](/auxiliary-sets/IGVFDS4432QTTQ/) has no `files`. File sets are expected to have files.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_no_files",
                "path": "/auxiliary-sets/IGVFDS4432QTTQ/"
            }
        ],
        "WARNING": [
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM8559QOCC](/in-vitro-systems/IGVFSM8559QOCC/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM8559QOCC/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
            "title": "Jesse Engreitz"
        },
        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
    },
    "construct_library_sets": [
        {
            "@id": "/construct-library-sets/IGVFDS8953DFJK/",
            "accession": "IGVFDS8953DFJK",
            "file_set_type": "guide library",
            "integrated_content_files": [
                {
                    "@id": "/tabular-files/IGVFFI5833LNWN/",
                    "accession": "IGVFFI5833LNWN",
                    "content_type": "guide RNA sequences",
                    "status": "released",
                    "summary": "GRCh38 guide RNA sequences"
                }
            ],
            "status": "released",
            "summary": "guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3"
        }
    ],
    "control_for": [],
    "creation_timestamp": "2024-04-15T23:17:29.112012+00:00",
    "donors": [
        {
            "@id": "/human-donors/IGVFDO3459DFTW/",
            "accession": "IGVFDO3459DFTW",
            "aliases": [
                "igvf:donor_of_teloHAEC"
            ],
            "sex": "female",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "file_set_type": "gRNA sequencing",
    "files": [],
    "input_for": [
        "/analysis-sets/IGVFDS7917YHKA/"
    ],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "measurement_sets": [],
    "release_timestamp": "2024-06-22T00:26:51.802995+00:00",
    "revoke_detail": "This auxiliary set has been revoked as its files have been moved to the measurement set: /measurement-sets/IGVFDS9444AXIW/",
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM8559QOCC/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM8559QOCC",
            "aliases": [
                "jesse-engreitz:in-vitro-system_NOS3_CRISPRi_FF_R2_FFrep2_binB_PCR2_S218"
            ],
            "classifications": [
                "cell line"
            ],
            "modifications": [
                {
                    "@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
                    "modality": "interference",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/NTR_0000753/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:TeloHAEC"
                    ],
                    "status": "released",
                    "summary": "TeloHAEC",
                    "term_name": "TeloHAEC"
                }
            ],
            "status": "released",
            "summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS bin B for 26-50% expression of NOS3) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
            "taxa": "Homo sapiens"
        }
    ],
    "schema_version": "12",
    "status": "revoked",
    "submitted_by": {
        "@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
        "title": "Chongyon Park"
    },
    "summary": "gRNA sequencing",
    "uuid": "8c671350-d873-4754-8871-11f72d23b60e"
}