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INDEXED
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AuxiliarySet
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IGVFDS4415ANKP
IGVFDS4415ANKP
released
Json view
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf9_10x3
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2797IRLM
fastq
reads
R1
1
IGVFFI6748QGLQ
Illumina NovaSeq X
223JHYLT3
3
502 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3137PXSI
fastq
reads
I1
1
IGVFFI4025NRAO
Illumina NovaSeq X
223JHYLT3
2
186 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4161BHBC
fastq
reads
R2
1
IGVFFI4025NRAO
Illumina NovaSeq X
223JHYLT3
2
1.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4806LIJR
fastq
reads
I2
1
IGVFFI6748QGLQ
Illumina NovaSeq X
223JHYLT3
3
143 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5677AZBI
fastq
reads
R2
1
IGVFFI6748QGLQ
Illumina NovaSeq X
223JHYLT3
3
1.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6643AUVY
fastq
reads
R1
1
IGVFFI4025NRAO
Illumina NovaSeq X
223JHYLT3
2
502 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6870TTEL
fastq
reads
R2
1
IGVFFI9306BOXQ
Illumina NovaSeq X
223JHYLT3
1
1.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7409ZDGW
fastq
reads
I1
1
IGVFFI9306BOXQ
Illumina NovaSeq X
223JHYLT3
1
180 MB
Ansuman Satpathy, Stanford
validated
IGVFFI8562KOQI
fastq
reads
I1
1
IGVFFI6748QGLQ
Illumina NovaSeq X
223JHYLT3
3
187 MB
Ansuman Satpathy, Stanford
validated
IGVFFI8726ELZJ
fastq
reads
R1
1
IGVFFI9306BOXQ
Illumina NovaSeq X
223JHYLT3
1
488 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM2794HHHZ
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1718HCES
ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS1742BLLN
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf9_10x3
Ansuman Satpathy, Stanford
IGVFDS9385ZIKY
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf9_10x3
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2269RNLP
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
ansuman-satpathy:igvf9_analysis_set_10x3
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford