IGVFDS4252ROMJ

released
{
    "@context": "/terms/",
    "@id": "/auxiliary-sets/IGVFDS4252ROMJ/",
    "@type": [
        "AuxiliarySet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS4252ROMJ",
    "aliases": [
        "jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep1_S3",
        "jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep2_S58",
        "jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep1_S9",
        "jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep2_S64",
        "jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep1_S15",
        "jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep2_S70",
        "jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep1_S21",
        "jesse-engreitz:auxiliary_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep2_S76"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing sequencing kit",
                "detail": "Auxiliary set [IGVFDS4252ROMJ](/auxiliary-sets/IGVFDS4252ROMJ/) has sequence file(s) [IGVFFI2043YWNR](/sequence-files/IGVFFI2043YWNR/), [IGVFFI4506MWVS](/sequence-files/IGVFFI4506MWVS/), [IGVFFI1890PKGY](/sequence-files/IGVFFI1890PKGY/), [IGVFFI7334BOPO](/sequence-files/IGVFFI7334BOPO/), [IGVFFI5042RRSN](/sequence-files/IGVFFI5042RRSN/), [IGVFFI9404PGPV](/sequence-files/IGVFFI9404PGPV/), [IGVFFI8568LLGQ](/sequence-files/IGVFFI8568LLGQ/), [IGVFFI0242VPKF](/sequence-files/IGVFFI0242VPKF/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_inconsistent_sequencing_kit",
                "path": "/auxiliary-sets/IGVFDS4252ROMJ/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
            "title": "Jesse Engreitz"
        },
        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
    },
    "control_for": [],
    "creation_timestamp": "2024-05-21T17:12:24.271526+00:00",
    "donors": [
        {
            "@id": "/human-donors/IGVFDO0384OZRW/",
            "accession": "IGVFDO0384OZRW",
            "aliases": [
                "igvf:donor_of_HCT116"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "file_set_type": "gRNA sequencing",
    "files": [
        {
            "@id": "/sequence-files/IGVFFI2043YWNR/",
            "accession": "IGVFFI2043YWNR",
            "aliases": [
                "jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep1_S3"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-06-01T01:58:07.482986+00:00",
            "file_format": "fastq",
            "file_size": 29091492,
            "href": "/sequence-files/IGVFFI2043YWNR/@@download/IGVFFI2043YWNR.fastq.gz",
            "s3_uri": "s3://igvf-files/2024/06/01/94b4871a-039e-44be-ab8a-a38b161871f6/IGVFFI2043YWNR.fastq.gz",
            "sequencing_platform": "/platform-terms/EFO_0008565/",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinC-PCR1-Rep1_S3_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI9392AVFW/",
            "accession": "IGVFFI9392AVFW",
            "aliases": [
                "jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep1_S3"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-06-11T20:45:38.278134+00:00",
            "file_format": "yaml",
            "file_size": 910,
            "href": "/configuration-files/IGVFFI9392AVFW/@@download/IGVFFI9392AVFW.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/06/11/38c6ec98-dc25-4726-8c0d-0ff255f1c2c5/IGVFFI9392AVFW.yaml.gz",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin0hrs-FF1-BinC-PCR1_Rep1_S3.yaml",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4506MWVS/",
            "accession": "IGVFFI4506MWVS",
            "aliases": [
                "jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep1_S9"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-06-01T01:58:47.307768+00:00",
            "file_format": "fastq",
            "file_size": 31581560,
            "href": "/sequence-files/IGVFFI4506MWVS/@@download/IGVFFI4506MWVS.fastq.gz",
            "s3_uri": "s3://igvf-files/2024/06/01/171dffe0-1262-49e1-959e-67f1f00dcb25/IGVFFI4506MWVS.fastq.gz",
            "sequencing_platform": "/platform-terms/EFO_0008565/",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinC-PCR2-Rep1_S9_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI1684INJA/",
            "accession": "IGVFFI1684INJA",
            "aliases": [
                "jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep2_S76"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-06-11T20:47:15.474540+00:00",
            "file_format": "yaml",
            "file_size": 910,
            "href": "/configuration-files/IGVFFI1684INJA/@@download/IGVFFI1684INJA.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/06/11/bbf401da-1422-4b93-b714-cc6ab8c0f112/IGVFFI1684INJA.yaml.gz",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin0hrs-FF1-BinC-PCR4_Rep2_S76.yaml",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI1307DGAP/",
            "accession": "IGVFFI1307DGAP",
            "aliases": [
                "jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep1_S15"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-06-11T20:46:33.366697+00:00",
            "file_format": "yaml",
            "file_size": 910,
            "href": "/configuration-files/IGVFFI1307DGAP/@@download/IGVFFI1307DGAP.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/06/11/ab047404-5d3e-4ed7-9fe9-20168098658b/IGVFFI1307DGAP.yaml.gz",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin0hrs-FF1-BinC-PCR3_Rep1_S15.yaml",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1890PKGY/",
            "accession": "IGVFFI1890PKGY",
            "aliases": [
                "jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep2_S70"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-06-01T01:59:50.162677+00:00",
            "file_format": "fastq",
            "file_size": 13886933,
            "href": "/sequence-files/IGVFFI1890PKGY/@@download/IGVFFI1890PKGY.fastq.gz",
            "s3_uri": "s3://igvf-files/2024/06/01/d45c17ab-36c2-4f67-a302-b9e4c35e2c5a/IGVFFI1890PKGY.fastq.gz",
            "sequencing_platform": "/platform-terms/EFO_0008565/",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinC-PCR3-Rep2_S70_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI7410ZLTK/",
            "accession": "IGVFFI7410ZLTK",
            "aliases": [
                "jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep2_S58"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-06-11T20:45:51.658176+00:00",
            "file_format": "yaml",
            "file_size": 909,
            "href": "/configuration-files/IGVFFI7410ZLTK/@@download/IGVFFI7410ZLTK.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/06/11/d8263e0b-50c8-43ec-a09f-9a576ff7543e/IGVFFI7410ZLTK.yaml.gz",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin0hrs-FF1-BinC-PCR1_Rep2_S58.yaml",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7334BOPO/",
            "accession": "IGVFFI7334BOPO",
            "aliases": [
                "jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep2_S64"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-06-01T01:59:08.141080+00:00",
            "file_format": "fastq",
            "file_size": 19696273,
            "href": "/sequence-files/IGVFFI7334BOPO/@@download/IGVFFI7334BOPO.fastq.gz",
            "s3_uri": "s3://igvf-files/2024/06/01/b9e47f13-307c-40f2-8a66-445210d28c68/IGVFFI7334BOPO.fastq.gz",
            "sequencing_platform": "/platform-terms/EFO_0008565/",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinC-PCR2-Rep2_S64_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI5042RRSN/",
            "accession": "IGVFFI5042RRSN",
            "aliases": [
                "jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep1_S15"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-06-01T01:59:28.834662+00:00",
            "file_format": "fastq",
            "file_size": 38727161,
            "href": "/sequence-files/IGVFFI5042RRSN/@@download/IGVFFI5042RRSN.fastq.gz",
            "s3_uri": "s3://igvf-files/2024/06/01/fa068516-1c71-4e72-ab59-1cb4640a43d7/IGVFFI5042RRSN.fastq.gz",
            "sequencing_platform": "/platform-terms/EFO_0008565/",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinC-PCR3-Rep1_S15_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9404PGPV/",
            "accession": "IGVFFI9404PGPV",
            "aliases": [
                "jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep2_S58"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-06-01T01:58:27.221922+00:00",
            "file_format": "fastq",
            "file_size": 9959917,
            "href": "/sequence-files/IGVFFI9404PGPV/@@download/IGVFFI9404PGPV.fastq.gz",
            "s3_uri": "s3://igvf-files/2024/06/01/c8af7250-ed35-494b-8dd6-c0870d2a1923/IGVFFI9404PGPV.fastq.gz",
            "sequencing_platform": "/platform-terms/EFO_0008565/",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinC-PCR1-Rep2_S58_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8568LLGQ/",
            "accession": "IGVFFI8568LLGQ",
            "aliases": [
                "jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep1_S21"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-06-01T02:00:10.335054+00:00",
            "file_format": "fastq",
            "file_size": 50825478,
            "href": "/sequence-files/IGVFFI8568LLGQ/@@download/IGVFFI8568LLGQ.fastq.gz",
            "s3_uri": "s3://igvf-files/2024/06/01/926a0a72-1ba5-495d-a365-b2aa27b1563e/IGVFFI8568LLGQ.fastq.gz",
            "sequencing_platform": "/platform-terms/EFO_0008565/",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinC-PCR4-Rep1_S21_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0242VPKF/",
            "accession": "IGVFFI0242VPKF",
            "aliases": [
                "jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep2_S76"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2024-06-01T02:00:30.708284+00:00",
            "file_format": "fastq",
            "file_size": 32226549,
            "href": "/sequence-files/IGVFFI0242VPKF/@@download/IGVFFI0242VPKF.fastq.gz",
            "s3_uri": "s3://igvf-files/2024/06/01/b4f4c96b-dd3b-4ead-94e3-78d75e146f65/IGVFFI0242VPKF.fastq.gz",
            "sequencing_platform": "/platform-terms/EFO_0008565/",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinC-PCR4-Rep2_S76_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI1001DNEG/",
            "accession": "IGVFFI1001DNEG",
            "aliases": [
                "jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep2_S70"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-06-11T20:46:47.575490+00:00",
            "file_format": "yaml",
            "file_size": 911,
            "href": "/configuration-files/IGVFFI1001DNEG/@@download/IGVFFI1001DNEG.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/06/11/2a96dad3-e1be-42f5-8569-48b331982192/IGVFFI1001DNEG.yaml.gz",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin0hrs-FF1-BinC-PCR3_Rep2_S70.yaml",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI7786EDHN/",
            "accession": "IGVFFI7786EDHN",
            "aliases": [
                "jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep2_S64"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-06-11T20:46:18.738308+00:00",
            "file_format": "yaml",
            "file_size": 910,
            "href": "/configuration-files/IGVFFI7786EDHN/@@download/IGVFFI7786EDHN.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/06/11/8d9844f1-4470-4637-a6bd-8f4e3fc77b75/IGVFFI7786EDHN.yaml.gz",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin0hrs-FF1-BinC-PCR2_Rep2_S64.yaml",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI7398OLMO/",
            "accession": "IGVFFI7398OLMO",
            "aliases": [
                "jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep1_S9"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-06-11T20:46:04.964469+00:00",
            "file_format": "yaml",
            "file_size": 910,
            "href": "/configuration-files/IGVFFI7398OLMO/@@download/IGVFFI7398OLMO.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/06/11/56e57d7a-4a60-4883-ad06-1e387f26ecff/IGVFFI7398OLMO.yaml.gz",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin0hrs-FF1-BinC-PCR2_Rep1_S9.yaml",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI8293WPGQ/",
            "accession": "IGVFFI8293WPGQ",
            "aliases": [
                "jesse-engreitz:seqspecfile_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep1_S21"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-06-11T20:47:01.510823+00:00",
            "file_format": "yaml",
            "file_size": 911,
            "href": "/configuration-files/IGVFFI8293WPGQ/@@download/IGVFFI8293WPGQ.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/06/11/0dc6cd41-b385-4d83-b46a-524223ed50f8/IGVFFI8293WPGQ.yaml.gz",
            "status": "released",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.MYC-Auxin0hrs-FF1-BinC-PCR4_Rep1_S21.yaml",
            "upload_status": "validated"
        }
    ],
    "input_for": [
        "/analysis-sets/IGVFDS4544YEQM/"
    ],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "measurement_sets": [
        {
            "@id": "/measurement-sets/IGVFDS1310KDLX/",
            "accession": "IGVFDS1310KDLX",
            "aliases": [
                "jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep1_S3",
                "jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep2_S58",
                "jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep1_S9",
                "jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep2_S64",
                "jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep1_S15",
                "jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep2_S70",
                "jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep1_S21",
                "jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep2_S76"
            ],
            "preferred_assay_title": "CRISPR FlowFISH screen",
            "status": "released"
        }
    ],
    "release_timestamp": "2024-07-10T20:19:29.095374+00:00",
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM4577TQPO/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM4577TQPO",
            "aliases": [
                "jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep1_S3",
                "jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR1_Rep2_S58",
                "jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep1_S9",
                "jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR2_Rep2_S64",
                "jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep1_S15",
                "jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR3_Rep2_S70",
                "jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep1_S21",
                "jesse-engreitz:in-vitro-system_CRUDO_MYC-Auxin0hrs-FF1-BinC-PCR4_Rep2_S76"
            ],
            "classifications": [
                "cell line"
            ],
            "construct_library_sets": [
                "/construct-library-sets/IGVFDS7857SYCK/"
            ],
            "modifications": [
                {
                    "@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
                    "modality": "interference",
                    "status": "released"
                },
                {
                    "@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
                    "modality": "degradation",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0002824/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:HCT116"
                    ],
                    "status": "released",
                    "summary": "HCT116",
                    "term_name": "HCT116"
                }
            ],
            "status": "released",
            "summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
            "taxa": "Homo sapiens"
        }
    ],
    "schema_version": "12",
    "status": "released",
    "submitted_by": {
        "@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
        "title": "Chongyon Park"
    },
    "submitted_files_timestamp": "2024-06-01T01:58:07.482986+00:00",
    "summary": "gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci",
    "uuid": "08ad8bf0-4cca-4e4b-bf4d-c76b4533a08b"
}